Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CCD89_RS01955 Genome accession   NZ_CP021723
Coordinates   354200..355003 (-) Length   267 a.a.
NCBI ID   WP_002221259.1    Uniprot ID   Q9JVB7
Organism   Neisseria meningitidis strain 13-600     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 349200..360003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD89_RS13130 - 351650..351841 (-) 192 Protein_331 hypothetical protein -
  CCD89_RS01950 (CCD89_01965) comA 351923..354142 (+) 2220 WP_153063688.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CCD89_RS01955 (CCD89_01970) comL 354200..355003 (-) 804 WP_002221259.1 outer membrane protein assembly factor BamD Machinery gene
  CCD89_RS01960 (CCD89_01975) rluD 355002..356126 (+) 1125 WP_002229205.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CCD89_RS01965 (CCD89_01980) - 356279..357226 (-) 948 WP_002229204.1 bile acid:sodium symporter family protein -
  CCD89_RS13135 - 357445..357618 (-) 174 Protein_336 IS5/IS1182 family transposase -
  CCD89_RS01980 (CCD89_01990) pgeF 357793..358572 (+) 780 WP_002229209.1 peptidoglycan editing factor PgeF -
  CCD89_RS01985 (CCD89_01995) lptE 358624..359103 (+) 480 WP_002214127.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30808.83 Da        Isoelectric Point: 8.9351

>NTDB_id=232754 CCD89_RS01955 WP_002221259.1 354200..355003(-) (comL) [Neisseria meningitidis strain 13-600]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=232754 CCD89_RS01955 WP_002221259.1 354200..355003(-) (comL) [Neisseria meningitidis strain 13-600]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCGCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAAGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTTCACCCGCAACACCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCTTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCCAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATGTCGGTGGCGCGCTA
CTACATGAAACGCGGTGCATACATCGCCGCCGCCAACCGCGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGTTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JVB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.502

100

0.985
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment