Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AYN42_RS13440 Genome accession   NZ_CP027352
Coordinates   2359927..2360664 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2012C-4606     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2354927..2365664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYN42_RS13425 clpC 2355381..2357954 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AYN42_RS13430 yfiH 2358084..2358815 (-) 732 WP_032344751.1 purine nucleoside phosphorylase YfiH -
  AYN42_RS13435 rluD 2358812..2359792 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AYN42_RS13440 comL 2359927..2360664 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AYN42_RS13450 raiA 2360935..2361276 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AYN42_RS13455 pheL 2361380..2361427 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AYN42_RS13460 pheA 2361526..2362686 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  AYN42_RS13465 tyrA 2362729..2363850 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AYN42_RS13470 aroF 2363861..2364931 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AYN42_RS13475 yfiL 2365141..2365506 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=232683 AYN42_RS13440 WP_000197686.1 2359927..2360664(+) (comL) [Escherichia coli strain 2012C-4606]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=232683 AYN42_RS13440 WP_000197686.1 2359927..2360664(+) (comL) [Escherichia coli strain 2012C-4606]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376