Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | A3P32_RS02260 | Genome accession | NZ_CP021704 |
| Coordinates | 447559..448077 (+) | Length | 172 a.a. |
| NCBI ID | WP_012845405.1 | Uniprot ID | D0R2Q3 |
| Organism | Lactobacillus johnsonii strain UMNLJ22 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 442559..453077
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3P32_RS02245 (A3P32_02250) | gyrB | 442575..444542 (+) | 1968 | WP_087712529.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| A3P32_RS02250 (A3P32_02255) | gyrA | 444553..447042 (+) | 2490 | WP_087712528.1 | DNA gyrase subunit A | - |
| A3P32_RS02255 (A3P32_02260) | rpsF | 447229..447525 (+) | 297 | WP_004896331.1 | 30S ribosomal protein S6 | - |
| A3P32_RS02260 (A3P32_02265) | ssb | 447559..448077 (+) | 519 | WP_012845405.1 | single-stranded DNA-binding protein | Machinery gene |
| A3P32_RS02265 (A3P32_02270) | rpsR | 448102..448338 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| A3P32_RS02270 (A3P32_02275) | - | 448432..449349 (+) | 918 | WP_012845406.1 | magnesium transporter CorA family protein | - |
| A3P32_RS02275 (A3P32_02280) | - | 449457..451475 (+) | 2019 | WP_087712527.1 | DHH family phosphoesterase | - |
| A3P32_RS02280 (A3P32_02285) | rplI | 451487..451942 (+) | 456 | WP_003651632.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18570.30 Da Isoelectric Point: 4.7531
>NTDB_id=232654 A3P32_RS02260 WP_012845405.1 447559..448077(+) (ssb) [Lactobacillus johnsonii strain UMNLJ22]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQANGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQANGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=232654 A3P32_RS02260 WP_012845405.1 447559..448077(+) (ssb) [Lactobacillus johnsonii strain UMNLJ22]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGGCTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAACAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGGCTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAACAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.069 |
100 |
0.628 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.568 |
100 |
0.517 |