Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A3P32_RS01285 Genome accession   NZ_CP021704
Coordinates   235309..237117 (+) Length   602 a.a.
NCBI ID   WP_087712620.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain UMNLJ22     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 230309..242117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3P32_RS01260 (A3P32_01265) - 230690..231472 (-) 783 WP_087712623.1 threonine/serine exporter family protein -
  A3P32_RS01265 (A3P32_01270) - 231489..233036 (-) 1548 WP_012846684.1 ABC-F family ATP-binding cassette domain-containing protein -
  A3P32_RS01270 (A3P32_01275) - 233036..233419 (-) 384 WP_012846685.1 hypothetical protein -
  A3P32_RS01275 (A3P32_01280) - 233644..233916 (+) 273 WP_087712622.1 hypothetical protein -
  A3P32_RS01280 (A3P32_01285) - 234021..235145 (-) 1125 WP_087712621.1 LCP family protein -
  A3P32_RS01285 (A3P32_01290) pepF 235309..237117 (+) 1809 WP_087712620.1 oligoendopeptidase F Regulator
  A3P32_RS01290 (A3P32_01295) - 237186..238697 (-) 1512 WP_180707151.1 L-lactate permease -
  A3P32_RS01295 (A3P32_01300) - 238819..239610 (-) 792 WP_012846690.1 metal ABC transporter permease -
  A3P32_RS01300 (A3P32_01305) - 239610..240269 (-) 660 WP_087712618.1 metal ABC transporter ATP-binding protein -
  A3P32_RS01305 (A3P32_01310) - 240306..241205 (-) 900 WP_087712617.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  A3P32_RS01310 (A3P32_01315) - 241507..241785 (-) 279 WP_011162513.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68564.42 Da        Isoelectric Point: 4.7262

>NTDB_id=232652 A3P32_RS01285 WP_087712620.1 235309..237117(+) (pepF) [Lactobacillus johnsonii strain UMNLJ22]
MALPTRNEVSDDLKWDLSRIFKDDQEWEQEYNQVATEIKNLDRFKGNLVKSGQDLYEGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPGETLAKFMQDEPRLKEYQHRLEQITKKRPHTLPASEEKIIAA
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTAVYDTLVKEVNSHLNLLHRYVGLRKKILGLSDLQMYDMYVPLTGKPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQKYYGDSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDKERTAYINFLKAGSSDY
PTEIMKRAGVDMTKANYLKDAFNTFEKRLNEFEKIVNELKTI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=232652 A3P32_RS01285 WP_087712620.1 235309..237117(+) (pepF) [Lactobacillus johnsonii strain UMNLJ22]
ATGGCTCTTCCAACAAGAAATGAAGTATCTGATGATCTCAAATGGGATCTTAGTCGTATTTTTAAAGACGATCAGGAATG
GGAACAAGAATATAATCAGGTCGCAACCGAAATTAAAAATTTAGATAGATTTAAGGGAAATCTTGTTAAATCTGGTCAAG
ATTTATATGAAGGAATTACAGAAATTTTATCTGTAAATCGTCGTTTAGAAAAAGTGTACGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTTGTTGCTAAAGCTCAAAGCTTAGCTAACCAAATGAGCGCCGCTAT
CTCCTTTGTCGATCCTGAAATTTTATCTATCCCAGGAGAGACACTTGCTAAATTTATGCAAGATGAACCTCGTTTAAAAG
AGTATCAACATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGCGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATGGGAACTTCCGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATACGGGTATGTTCAAGA
TGAAGACGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCACAAGATAGAAACGTTCGCAAAA
ATGCATTTGATGTTATGTATGCAAGCTATGGCCAGTTTGAAAATAGTCTCGCTTCAACTTTATCAGGTGAAGTAAAAGCC
CACAATTTTAATGCTCAAGTACATAAATACAATTCAGCTCGAGAGGCTGCTTTAAGTGAAAATGGCGTACCAACAGCTGT
TTACGATACATTGGTTAAAGAGGTAAATAGTCACCTCAACTTACTTCATCGCTACGTTGGTTTAAGAAAAAAGATTTTAG
GTCTTTCTGATCTACAAATGTATGATATGTATGTTCCATTAACCGGTAAGCCTAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAGGCTAGACGAGCCTTAGCGCCATTAGGAAAAGATTACCTCGAACATGTTGATTACATCTTTAATAATCGTGT
GATTGATGTGGTTGAAAGCCAAAATAAGGTAACAGGCGCTTATTCCGGTGGTTCCTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTATATACTCTAGTTCATGAAACTGGACACTCAGTACATTCCTGGTATACAAGA
AATACTCAACCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAAATTACCGATCCTAAAACACGCGCATTTGTTTTGAATCACTATCTTGATTCATTTAAGGGTA
CACTCTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCCGACGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTACGGCAATTTAAACCAAAAATATTACGGTGATAGTGTAGAACCGGGCGGAGAGATTGCTAA
AGAATGGGCCCGTATTCCTCATTTCTATTACAACTTTTATGTTTACCAATATGCAACAGGCTTTGCTGCTGCTACAGCTC
TCGCAAATAATGTTGTTCATGGTACTGACAAAGAACGTACCGCTTATATTAATTTCTTAAAGGCTGGCTCTTCAGATTAT
CCAACAGAGATAATGAAACGTGCCGGTGTCGATATGACAAAGGCCAATTACTTAAAAGACGCATTTAATACTTTTGAAAA
ACGACTTAATGAGTTTGAAAAAATCGTTAATGAATTGAAAACAATCTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.52

98.339

0.507

Multiple sequence alignment