Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ND05_RS24140 Genome accession   NZ_CP027351
Coordinates   4466436..4467173 (+) Length   245 a.a.
NCBI ID   WP_000197674.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3655     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4461436..4472173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND05_RS24125 clpC 4461890..4464463 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ND05_RS24130 yfiH 4464593..4465324 (-) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  ND05_RS24135 rluD 4465321..4466301 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ND05_RS24140 comL 4466436..4467173 (+) 738 WP_000197674.1 outer membrane protein assembly factor BamD Machinery gene
  ND05_RS24150 raiA 4467445..4467786 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ND05_RS24155 pheL 4467890..4467937 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ND05_RS24160 pheA 4468036..4469196 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  ND05_RS24165 tyrA 4469239..4470360 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ND05_RS24170 aroF 4470371..4471441 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ND05_RS24175 yfiL 4471650..4472015 (+) 366 WP_001370532.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27825.41 Da        Isoelectric Point: 6.4874

>NTDB_id=232644 ND05_RS24140 WP_000197674.1 4466436..4467173(+) (comL) [Escherichia coli strain 2014C-3655]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
PDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=232644 ND05_RS24140 WP_000197674.1 4466436..4467173(+) (comL) [Escherichia coli strain 2014C-3655]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
CCCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376