Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A3P31_RS00445 Genome accession   NZ_CP021703
Coordinates   73582..74100 (-) Length   172 a.a.
NCBI ID   WP_012845405.1    Uniprot ID   D0R2Q3
Organism   Lactobacillus johnsonii strain UMNLJ21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 68582..79100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3P31_RS00425 (A3P31_00585) rplI 69717..70172 (-) 456 WP_003651632.1 50S ribosomal protein L9 -
  A3P31_RS00430 (A3P31_00590) - 70184..72202 (-) 2019 WP_087712527.1 DHH family phosphoesterase -
  A3P31_RS00435 (A3P31_00595) - 72310..73227 (-) 918 WP_012845406.1 magnesium transporter CorA family protein -
  A3P31_RS00440 (A3P31_00600) rpsR 73321..73557 (-) 237 WP_003649728.1 30S ribosomal protein S18 -
  A3P31_RS00445 (A3P31_00605) ssb 73582..74100 (-) 519 WP_012845405.1 single-stranded DNA-binding protein Machinery gene
  A3P31_RS00450 (A3P31_00610) rpsF 74134..74430 (-) 297 WP_004896331.1 30S ribosomal protein S6 -
  A3P31_RS00455 (A3P31_00615) gyrA 74617..77106 (-) 2490 WP_087712528.1 DNA gyrase subunit A -
  A3P31_RS00460 (A3P31_00620) gyrB 77117..79084 (-) 1968 WP_087712529.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18570.30 Da        Isoelectric Point: 4.7531

>NTDB_id=232634 A3P31_RS00445 WP_012845405.1 73582..74100(-) (ssb) [Lactobacillus johnsonii strain UMNLJ21]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQANGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=232634 A3P31_RS00445 WP_012845405.1 73582..74100(-) (ssb) [Lactobacillus johnsonii strain UMNLJ21]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGGCTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAACAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0R2Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.069

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.568

100

0.517

Multiple sequence alignment