Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AZF34_RS15065 Genome accession   NZ_CP027347
Coordinates   2761741..2762478 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C-4361     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2756741..2767478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZF34_RS15050 clpC 2757195..2759768 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AZF34_RS15055 yfiH 2759898..2760629 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  AZF34_RS15060 rluD 2760626..2761606 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AZF34_RS15065 comL 2761741..2762478 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AZF34_RS15075 raiA 2762749..2763090 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AZF34_RS15080 pheL 2763194..2763241 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AZF34_RS15085 pheA 2763340..2764500 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  AZF34_RS15090 tyrA 2764543..2765664 (-) 1122 WP_000225214.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AZF34_RS15095 aroF 2765675..2766745 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AZF34_RS15100 yfiL 2766955..2767320 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=232534 AZF34_RS15065 WP_000197686.1 2761741..2762478(+) (comL) [Escherichia coli strain 2013C-4361]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=232534 AZF34_RS15065 WP_000197686.1 2761741..2762478(+) (comL) [Escherichia coli strain 2013C-4361]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376