Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   S100027_RS19660 Genome accession   NZ_CP021677
Coordinates   3732830..3733519 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus licheniformis strain SRCM100027     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3727830..3738519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100027_RS19625 (S100027_03945) - 3728004..3728480 (-) 477 WP_003185711.1 flagellar protein FlgN -
  S100027_RS19630 (S100027_03946) flgM 3728499..3728765 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  S100027_RS19635 (S100027_03947) - 3728845..3729264 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  S100027_RS19640 comFC 3729323..3730057 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  S100027_RS19645 (S100027_03948) - 3730014..3730298 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  S100027_RS19650 (S100027_03949) comFA 3730353..3731747 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  S100027_RS19655 (S100027_03950) - 3731868..3732710 (-) 843 WP_003185726.1 DegV family protein -
  S100027_RS19660 (S100027_03951) degU 3732830..3733519 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  S100027_RS19665 (S100027_03952) degS 3733601..3734758 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator
  S100027_RS19670 (S100027_03953) - 3734972..3735610 (+) 639 WP_003185736.1 YigZ family protein -
  S100027_RS19675 (S100027_03954) - 3735625..3736698 (+) 1074 WP_017473894.1 LCP family protein -
  S100027_RS19680 (S100027_03955) - 3736783..3737157 (-) 375 WP_003185738.1 hypothetical protein -
  S100027_RS19685 (S100027_03956) - 3737277..3738341 (-) 1065 WP_003185739.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=232491 S100027_RS19660 WP_003185730.1 3732830..3733519(-) (degU) [Bacillus licheniformis strain SRCM100027]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=232491 S100027_RS19660 WP_003185730.1 3732830..3733519(-) (degU) [Bacillus licheniformis strain SRCM100027]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTTA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGGGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTAGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACACACA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAGGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTCACAAGAAGGGAATGCGAGGTACTGCAGATGCTGGCGGATGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTTGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment