Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   S100027_RS13700 Genome accession   NZ_CP021677
Coordinates   2617275..2618339 (-) Length   354 a.a.
NCBI ID   WP_073425737.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM100027     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2612275..2623339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100027_RS13655 (S100027_02742) tapA 2612775..2613503 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  S100027_RS13660 (S100027_02743) - 2613780..2614100 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  S100027_RS13665 (S100027_02744) - 2614124..2614306 (-) 183 WP_003183456.1 YqzE family protein -
  S100027_RS13670 (S100027_02745) comGG 2614395..2614760 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  S100027_RS13675 (S100027_02746) comGF 2614773..2615261 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  S100027_RS13680 comGE 2615170..2615517 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  S100027_RS13685 (S100027_02747) comGD 2615501..2615938 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  S100027_RS13690 (S100027_02748) comGC 2615944..2616237 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  S100027_RS13695 (S100027_02749) comGB 2616251..2617285 (-) 1035 WP_080626943.1 competence type IV pilus assembly protein ComGB Machinery gene
  S100027_RS13700 (S100027_02750) comGA 2617275..2618339 (-) 1065 WP_073425737.1 competence type IV pilus ATPase ComGA Machinery gene
  S100027_RS13705 (S100027_02751) - 2618496..2619335 (-) 840 WP_080626944.1 STAS domain-containing protein -
  S100027_RS13715 (S100027_02753) - 2619577..2619954 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  S100027_RS13720 (S100027_02754) - 2620163..2620408 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  S100027_RS13725 (S100027_02755) - 2620446..2621084 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  S100027_RS13730 (S100027_02756) - 2621240..2621413 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  S100027_RS13735 (S100027_02757) - 2621474..2621788 (-) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -
  S100027_RS13740 (S100027_02758) - 2621804..2622913 (-) 1110 WP_003183488.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39758.32 Da        Isoelectric Point: 9.1029

>NTDB_id=232471 S100027_RS13700 WP_073425737.1 2617275..2618339(-) (comGA) [Bacillus licheniformis strain SRCM100027]
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKDGLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINREPVHLRMSTLPTIHDESLVIRLLPKMSSKPLTKLSLFPSATFKLLSFLKHSHGLMLFTGPTGSGKTTTLYSLIDY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLELGVDMTEIEQTLVAVSAQRLVDIVCQFCGDSCTLYCRLSRPVRRASVFELLYGKSLNLCIEEAKGRC
GGIKTDTLKMLIRKGIALGYLPSKTYERWIGHED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=232471 S100027_RS13700 WP_073425737.1 2617275..2618339(-) (comGA) [Bacillus licheniformis strain SRCM100027]
TTGTACACGATCGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTACGCTTCAGGATTGATGACGAACTGTTTCAAAAAGACGGATTAACGAGAAATGAGTGCT
CTAGACTCATTTCTCACTTTAAATTTCTTTCTTCGATGGACATTGGCGAGAGACGGCTGCCGCAAAGCGGGGCTTTAACT
CTTTATATCAACCGTGAGCCCGTTCATTTAAGGATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGATGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTCCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATGCTTTTCACCGGCCCGACAGGCTCGGGAAAAACGACAACACTCTATTCTTTAATTGACTAC
GCCAAGCGGCATTTTAAGCGAAATATCATTACGTTGGAAGACCCGGTCGAATCAAGAAGCGAAAACATTTTGCAAGTACA
AGTGAACGAAAAAGCGGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTGCGCCACGATCCGGACATGATCATCCTAG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACGGGACACCTTGTTCTATCGAGCATGCAT
GCGAAAAATGCTAAAGGTGCGATATACAGGCTGCTCGAGCTCGGCGTTGATATGACAGAAATTGAACAAACATTGGTCGC
AGTCAGCGCCCAGCGTCTTGTCGATATCGTCTGTCAGTTTTGCGGCGACAGCTGCACTTTGTATTGCAGATTGTCGAGAC
CAGTTAGAAGAGCAAGCGTCTTTGAACTTTTGTACGGAAAAAGCCTTAATCTCTGCATCGAAGAAGCAAAAGGCAGATGC
GGTGGCATCAAAACAGACACCTTAAAAATGCTGATCCGCAAGGGAATAGCACTCGGATATCTGCCGTCGAAAACTTATGA
ACGCTGGATAGGGCATGAAGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.667

Multiple sequence alignment