Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   S100027_RS13695 Genome accession   NZ_CP021677
Coordinates   2616251..2617285 (-) Length   344 a.a.
NCBI ID   WP_080626943.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM100027     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2611251..2622285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100027_RS13645 (S100027_02740) tasA 2611326..2612120 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  S100027_RS13650 (S100027_02741) sipW 2612194..2612778 (-) 585 WP_003183449.1 signal peptidase I SipW -
  S100027_RS13655 (S100027_02742) tapA 2612775..2613503 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  S100027_RS13660 (S100027_02743) - 2613780..2614100 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  S100027_RS13665 (S100027_02744) - 2614124..2614306 (-) 183 WP_003183456.1 YqzE family protein -
  S100027_RS13670 (S100027_02745) comGG 2614395..2614760 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  S100027_RS13675 (S100027_02746) comGF 2614773..2615261 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  S100027_RS13680 comGE 2615170..2615517 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  S100027_RS13685 (S100027_02747) comGD 2615501..2615938 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  S100027_RS13690 (S100027_02748) comGC 2615944..2616237 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  S100027_RS13695 (S100027_02749) comGB 2616251..2617285 (-) 1035 WP_080626943.1 competence type IV pilus assembly protein ComGB Machinery gene
  S100027_RS13700 (S100027_02750) comGA 2617275..2618339 (-) 1065 WP_073425737.1 competence type IV pilus ATPase ComGA Machinery gene
  S100027_RS13705 (S100027_02751) - 2618496..2619335 (-) 840 WP_080626944.1 STAS domain-containing protein -
  S100027_RS13715 (S100027_02753) - 2619577..2619954 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  S100027_RS13720 (S100027_02754) - 2620163..2620408 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  S100027_RS13725 (S100027_02755) - 2620446..2621084 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  S100027_RS13730 (S100027_02756) - 2621240..2621413 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  S100027_RS13735 (S100027_02757) - 2621474..2621788 (-) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39768.04 Da        Isoelectric Point: 9.3543

>NTDB_id=232470 S100027_RS13695 WP_080626943.1 2616251..2617285(-) (comGB) [Bacillus licheniformis strain SRCM100027]
MKIKMKWPVREQADLLKKLGDMMQSGYMILDALSMLKLQLNERRRADLTFAMEKLTEGCPVFQVLEMISFHKDAVTIVYF
AEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPLFLVLTVCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVFD
HFYLFFAGLPLVAAALSLYYLCSFRHKPPEDKMAFLITIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LRFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=232470 S100027_RS13695 WP_080626943.1 2616251..2617285(-) (comGB) [Bacillus licheniformis strain SRCM100027]
ATGAAGATTAAAATGAAGTGGCCTGTCCGGGAACAGGCGGACCTTCTGAAAAAACTAGGAGACATGATGCAGAGTGGCTA
TATGATTTTGGATGCTTTAAGTATGCTGAAATTGCAATTGAATGAAAGACGAAGAGCGGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGTGTCCTGTGTTTCAAGTTCTTGAAATGATTTCCTTTCATAAGGATGCTGTCACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATTTGCCTTTAGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAAGCGAAAA
ATTAAAGAAAGCCGCCAGATACCCCTTGTTTTTAGTTTTAACGGTCTGCGTCATCATCTCTATTATGAAATCAGCAATAG
TTCCGCAATTTTCCGCCATCTATGAATCGATGAACGTTGAAACGTCTTTTGCAACGACTCTCATCTTTTATGTTTTCGAT
CACTTTTATCTTTTTTTCGCGGGACTGCCGCTGGTTGCCGCAGCTCTATCCCTCTATTATCTGTGTTCATTCCGCCATAA
ACCTCCAGAAGACAAAATGGCCTTTCTCATTACAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGCTATTTTT
TATCGCTCCAGCTGAGCAATCTTTTGCAAGCGGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTACGATTTCATAAAAATGAAGCGAAGCGCTTGATCGAGCGGCTGAAACAGGGGGAGAGTCTGGAGCAGATGCTGGCCGG
ACATCCGTTTTATGAAAATGATTTAGCAAAGGCTGTTGCACACGGCCAACTAAATGGGCACTTATACAGAGAGCTGTATT
CATATAGTCAGTTTTTGATTGAGCGGCTTGAAAGAAAGGCCGAAAAATGGACAGGCCTGATCCAGCCATTGATTTACGGG
CTAACCGCGGCGATGATATTAATTCTTTATTTGTCCATGCTTTTGCCAATGTATCAAATGATGAACCAGCTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.347

93.895

0.529

Multiple sequence alignment