Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   S100027_RS13640 Genome accession   NZ_CP021677
Coordinates   2610886..2611221 (+) Length   111 a.a.
NCBI ID   WP_006637528.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM100027     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2605886..2616221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100027_RS13620 (S100027_02735) gcvT 2606318..2607412 (-) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -
  S100027_RS13625 (S100027_02736) - 2608005..2609684 (+) 1680 WP_003183439.1 DEAD/DEAH box helicase -
  S100027_RS13630 (S100027_02737) - 2609691..2610485 (+) 795 WP_003183441.1 YqhG family protein -
  S100027_RS13635 (S100027_02738) sinI 2610676..2610852 (+) 177 WP_003183444.1 anti-repressor SinI Regulator
  S100027_RS13640 (S100027_02739) sinR 2610886..2611221 (+) 336 WP_006637528.1 transcriptional regulator SinR Regulator
  S100027_RS13645 (S100027_02740) tasA 2611326..2612120 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  S100027_RS13650 (S100027_02741) sipW 2612194..2612778 (-) 585 WP_003183449.1 signal peptidase I SipW -
  S100027_RS13655 (S100027_02742) tapA 2612775..2613503 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  S100027_RS13660 (S100027_02743) - 2613780..2614100 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  S100027_RS13665 (S100027_02744) - 2614124..2614306 (-) 183 WP_003183456.1 YqzE family protein -
  S100027_RS13670 (S100027_02745) comGG 2614395..2614760 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  S100027_RS13675 (S100027_02746) comGF 2614773..2615261 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  S100027_RS13680 comGE 2615170..2615517 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  S100027_RS13685 (S100027_02747) comGD 2615501..2615938 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12963.59 Da        Isoelectric Point: 5.9495

>NTDB_id=232468 S100027_RS13640 WP_006637528.1 2610886..2611221(+) (sinR) [Bacillus licheniformis strain SRCM100027]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=232468 S100027_RS13640 WP_006637528.1 2610886..2611221(+) (sinR) [Bacillus licheniformis strain SRCM100027]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937

Multiple sequence alignment