Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6N23_RS10325 Genome accession   NZ_CP027342
Coordinates   2016157..2016894 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2014C-4587     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2011157..2021894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N23_RS10290 yfiL 2011315..2011680 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  C6N23_RS10295 aroF 2011890..2012960 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6N23_RS10300 tyrA 2012971..2014092 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6N23_RS10305 pheA 2014135..2015295 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6N23_RS10310 pheL 2015394..2015441 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6N23_RS10315 raiA 2015545..2015886 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6N23_RS10325 comL 2016157..2016894 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6N23_RS10330 rluD 2017029..2018009 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6N23_RS10335 yfiH 2018006..2018737 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6N23_RS10340 clpC 2018867..2021440 (+) 2574 WP_106914245.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=232467 C6N23_RS10325 WP_000197686.1 2016157..2016894(-) (comL) [Escherichia coli strain 2014C-4587]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=232467 C6N23_RS10325 WP_000197686.1 2016157..2016894(-) (comL) [Escherichia coli strain 2014C-4587]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment