Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   S101106_RS12520 Genome accession   NZ_CP021674
Coordinates   2429590..2430156 (-) Length   188 a.a.
NCBI ID   WP_011666823.1    Uniprot ID   M5ABA8
Organism   Levilactobacillus brevis strain SRCM101106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2424590..2435156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101106_RS12500 (S101106_02546) - 2424970..2425746 (-) 777 WP_011666827.1 hypothetical protein -
  S101106_RS12505 (S101106_02547) - 2426355..2427962 (+) 1608 WP_087609681.1 peptide ABC transporter substrate-binding protein -
  S101106_RS12510 (S101106_02548) - 2427993..2429180 (+) 1188 WP_087609682.1 amidohydrolase family protein -
  S101106_RS12515 (S101106_02549) rpsR 2429325..2429561 (-) 237 WP_011666824.1 30S ribosomal protein S18 -
  S101106_RS12520 (S101106_02550) ssb 2429590..2430156 (-) 567 WP_011666823.1 single-stranded DNA-binding protein Machinery gene
  S101106_RS12525 (S101106_02551) rpsF 2430190..2430486 (-) 297 WP_011666822.1 30S ribosomal protein S6 -
  S101106_RS12530 (S101106_02552) gyrA 2431255..2433789 (-) 2535 WP_011666821.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20513.13 Da        Isoelectric Point: 4.7381

>NTDB_id=232427 S101106_RS12520 WP_011666823.1 2429590..2430156(-) (ssb) [Levilactobacillus brevis strain SRCM101106]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYTSGNPAPAAPSQGMAPNSGSNNQ
NSNANNNAADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=232427 S101106_RS12520 WP_011666823.1 2429590..2430156(-) (ssb) [Levilactobacillus brevis strain SRCM101106]
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACACGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTACGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAATCCATACACGAGTGGGAATCCAGCTCCGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAGTAACAATCAG
AACAGTAATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGCGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5ABA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.702

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.574

Multiple sequence alignment