Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdE   Type   Machinery gene
Locus tag   MMP_RS08675 Genome accession   NC_005791
Coordinates   1627151..1627375 (-) Length   74 a.a.
NCBI ID   WP_011171629.1    Uniprot ID   Q6LWM4
Organism   Methanococcus maripaludis S2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1622151..1632375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMP_RS08655 (MMP1681) - 1622934..1624220 (-) 1287 WP_011171625.1 phosphoadenosine phosphosulfate reductase family protein -
  MMP_RS08660 (MMP1682) recJ 1624270..1625673 (-) 1404 WP_011171626.1 single-stranded-DNA-specific exonuclease RecJ -
  MMP_RS08665 (MMP1683) - 1625806..1626447 (+) 642 WP_011171627.1 hypothetical protein -
  MMP_RS08670 (MMP1684) - 1626448..1627131 (-) 684 WP_011171628.1 metallophosphoesterase family protein -
  MMP_RS08675 (MMP1685) epdE 1627151..1627375 (-) 225 WP_011171629.1 class III signal peptide-containing protein Machinery gene
  MMP_RS08685 - 1627785..1627982 (+) 198 WP_013999971.1 AtpZ/AtpI family protein -
  MMP_RS08690 (MMP1686) - 1627999..1629000 (+) 1002 WP_011171630.1 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 -
  MMP_RS08695 (MMP1687) - 1629018..1629224 (+) 207 WP_011171631.1 4Fe-4S dicluster domain-containing protein -
  MMP_RS08700 (MMP1688) - 1629235..1629918 (+) 684 WP_011171632.1 DUF7388 family protein -
  MMP_RS08705 (MMP1689) comE 1629931..1630488 (-) 558 WP_011171633.1 sulfopyruvate decarboxylase subunit beta -
  MMP_RS08710 (MMP1690) - 1630490..1631158 (-) 669 WP_011171634.1 HisA/HisF family protein -

Sequence

Protein


Download         Length: 74 a.a.        Molecular weight: 7787.91 Da        Isoelectric Point: 6.1175

>NTDB_id=23239 MMP_RS08675 WP_011171629.1 1627151..1627375(-) (epdE) [Methanococcus maripaludis S2]
MKFLEKLTSKKGQIAMELGILVMAAVAVAAIAAYFYATNVSNTGKQITNSTNQTTQALADAISDATSQMSNITD

Nucleotide


Download         Length: 225 bp        

>NTDB_id=23239 MMP_RS08675 WP_011171629.1 1627151..1627375(-) (epdE) [Methanococcus maripaludis S2]
ATGAAATTTTTAGAAAAACTAACATCAAAAAAAGGTCAAATAGCAATGGAACTCGGTATTCTTGTTATGGCAGCAGTGGC
AGTTGCAGCAATCGCAGCGTACTTTTATGCAACGAATGTTAGCAACACGGGAAAACAGATTACAAATTCGACAAACCAGA
CAACACAAGCGCTAGCTGACGCAATATCTGACGCTACCTCACAAATGTCAAATATTACGGATTAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6LWM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdE Methanococcus maripaludis strain DSM 2067

95.714

94.595

0.905
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

64.384

98.649

0.635

Multiple sequence alignment