Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | S100141_RS10140 | Genome accession | NZ_CP021669 |
| Coordinates | 1884388..1884723 (+) | Length | 111 a.a. |
| NCBI ID | WP_006637528.1 | Uniprot ID | - |
| Organism | Bacillus licheniformis strain SRCM100141 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1879388..1889723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S100141_RS10120 (S100141_02046) | gcvT | 1879820..1880914 (-) | 1095 | WP_003183436.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| S100141_RS10125 (S100141_02047) | - | 1881507..1883186 (+) | 1680 | WP_003183439.1 | DEAD/DEAH box helicase | - |
| S100141_RS10130 (S100141_02048) | - | 1883193..1883987 (+) | 795 | WP_003183441.1 | YqhG family protein | - |
| S100141_RS10135 (S100141_02049) | sinI | 1884178..1884354 (+) | 177 | WP_003183444.1 | anti-repressor SinI | Regulator |
| S100141_RS10140 (S100141_02050) | sinR | 1884388..1884723 (+) | 336 | WP_006637528.1 | transcriptional regulator SinR | Regulator |
| S100141_RS10145 (S100141_02051) | tasA | 1884828..1885622 (-) | 795 | WP_003183447.1 | biofilm matrix protein TasA | - |
| S100141_RS10150 (S100141_02052) | sipW | 1885696..1886280 (-) | 585 | WP_003183449.1 | signal peptidase I SipW | - |
| S100141_RS10155 (S100141_02053) | tapA | 1886277..1887005 (-) | 729 | WP_003183451.1 | amyloid fiber anchoring/assembly protein TapA | - |
| S100141_RS10160 (S100141_02054) | - | 1887282..1887602 (+) | 321 | WP_003183454.1 | YqzG/YhdC family protein | - |
| S100141_RS10165 (S100141_02055) | - | 1887626..1887808 (-) | 183 | WP_003183456.1 | YqzE family protein | - |
| S100141_RS10170 (S100141_02056) | comGG | 1887897..1888262 (-) | 366 | WP_003183459.1 | competence type IV pilus minor pilin ComGG | - |
| S100141_RS10175 (S100141_02057) | comGF | 1888275..1888763 (-) | 489 | WP_011201694.1 | competence type IV pilus minor pilin ComGF | - |
| S100141_RS10180 | comGE | 1888672..1889019 (-) | 348 | WP_009327907.1 | competence type IV pilus minor pilin ComGE | - |
| S100141_RS10185 (S100141_02058) | comGD | 1889003..1889440 (-) | 438 | WP_009327905.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12963.59 Da Isoelectric Point: 5.9495
>NTDB_id=232361 S100141_RS10140 WP_006637528.1 1884388..1884723(+) (sinR) [Bacillus licheniformis strain SRCM100141]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=232361 S100141_RS10140 WP_006637528.1 1884388..1884723(+) (sinR) [Bacillus licheniformis strain SRCM100141]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |