Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6N28_RS14205 Genome accession   NZ_CP027338
Coordinates   2561122..2561859 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2014C-3051     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2556122..2566859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N28_RS14190 clpC 2556576..2559149 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6N28_RS14195 yfiH 2559279..2560010 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6N28_RS14200 rluD 2560007..2560987 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6N28_RS14205 comL 2561122..2561859 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6N28_RS14215 raiA 2562130..2562471 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6N28_RS14220 pheL 2562575..2562622 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6N28_RS14225 pheA 2562721..2563881 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6N28_RS14230 tyrA 2563924..2565045 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6N28_RS14235 aroF 2565056..2566126 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6N28_RS14240 yfiL 2566336..2566701 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=232290 C6N28_RS14205 WP_000197686.1 2561122..2561859(+) (comL) [Escherichia coli strain 2014C-3051]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=232290 C6N28_RS14205 WP_000197686.1 2561122..2561859(+) (comL) [Escherichia coli strain 2014C-3051]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376