Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   MMP_RS00250 Genome accession   NC_005791
Coordinates   56946..58595 (-) Length   549 a.a.
NCBI ID   WP_011169984.1    Uniprot ID   Q6M177
Organism   Methanococcus maripaludis S2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51946..63595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMP_RS00225 (MMP0035) - 52740..53789 (+) 1050 WP_011169979.1 ATP-grasp domain-containing protein -
  MMP_RS00230 (MMP0036) tfe 53793..54350 (+) 558 WP_011169980.1 transcription factor E -
  MMP_RS00235 (MMP0037) - 54430..54948 (+) 519 WP_394295962.1 HDIG domain-containing metalloprotein -
  MMP_RS00240 (MMP0038) epdJ 54975..55871 (-) 897 WP_011169982.1 type II secretion system F family protein Machinery gene
  MMP_RS00245 (MMP0039) epdK 55876..56934 (-) 1059 WP_011169983.1 type II secretion system F family protein Machinery gene
  MMP_RS00250 (MMP0040) epdL 56946..58595 (-) 1650 WP_011169984.1 type II/IV secretion system ATPase subunit Machinery gene
  MMP_RS00255 (MMP0041) - 58605..59624 (-) 1020 WP_011169985.1 transcription initiation factor IIB -
  MMP_RS00260 (MMP0042) - 59643..59924 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -
  MMP_RS00265 (MMP0043) fni 60428..61495 (+) 1068 WP_011169987.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  MMP_RS00270 (MMP0044) - 61568..62914 (+) 1347 WP_011169988.1 RNase J family beta-CASP ribonuclease -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 61779.93 Da        Isoelectric Point: 5.7523

>NTDB_id=23229 MMP_RS00250 WP_011169984.1 56946..58595(-) (epdL) [Methanococcus maripaludis S2]
MGLFDRIQSRDSNPSVAKKNNVSEKVSETPSILDNSEKVKKPEIKVGFSVNERAKQPVEEFERDSTSSILDKYFVKVDDI
DFDVIIEKENGVTLYKIPEITLMNTALAKFSDMDIKTIKAELSESTLQKLGQIQGYLKNYSEKNNLHLRDIEILHLSHYF
YLIIGKLGLLEIPLNDSKLEEVMVNGVESPSFVFHRKYQMCETNIRLDRHEATRVVESIAYLAGRTIDSRTPMLDAFLPD
GSRVNATMSDVTLGGNTITIRKFSEDPLTIVDLINFGTFDLELAAFLWQAVEGYFGAKPANTLIVGGTGSGKTTTLNVVS
MFSMYTDRLVTIEDTPELQVPLTHLIKMITRPGRPGIQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAMNTGH
DGCSGTLHANSADEALIRLINPPMNVPKVMMSSVDFIINQQRIKRNKKTVRRILGVVEIGGSGENITKTELFKYDGISDS
VVKTGICMWEEDVCQIAGITRDELMDDRINRKKVLKYMVNNNINDIRKVGDVLKQYQENPENVLKNILE

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=23229 MMP_RS00250 WP_011169984.1 56946..58595(-) (epdL) [Methanococcus maripaludis S2]
ATGGGGCTTTTTGACAGAATCCAAAGCAGAGATTCCAATCCATCTGTCGCTAAAAAAAATAATGTATCTGAAAAAGTATC
TGAAACCCCGAGCATACTTGATAATTCTGAAAAGGTCAAAAAACCCGAAATAAAAGTGGGTTTTTCAGTGAATGAACGGG
CAAAACAGCCAGTAGAAGAATTTGAAAGAGATTCTACAAGCTCAATACTTGATAAATACTTTGTAAAAGTTGATGACATT
GATTTTGATGTAATTATTGAAAAAGAAAATGGTGTCACACTATACAAGATTCCAGAAATCACCCTTATGAATACAGCTCT
TGCAAAATTTTCAGATATGGATATTAAAACAATAAAAGCGGAACTTTCAGAATCTACTCTTCAAAAATTAGGGCAGATTC
AAGGATACCTTAAAAATTATTCGGAAAAAAATAATTTACATTTAAGAGACATAGAAATACTCCATTTATCACACTATTTT
TACTTAATAATTGGAAAATTAGGGCTTTTAGAAATTCCATTAAATGATAGCAAATTAGAAGAAGTAATGGTAAATGGTGT
TGAATCACCTTCTTTTGTATTTCATAGAAAATACCAGATGTGTGAGACAAATATTAGACTCGATAGACACGAAGCAACGA
GGGTTGTTGAAAGTATAGCTTATCTTGCAGGTAGAACTATTGATTCAAGAACTCCAATGCTTGATGCATTTTTACCAGAT
GGAAGCAGGGTTAACGCTACAATGAGTGACGTTACATTGGGTGGAAACACAATTACCATTCGTAAGTTTAGTGAAGACCC
TTTAACTATTGTTGATTTAATTAATTTTGGAACTTTTGATCTAGAACTTGCGGCATTCCTCTGGCAGGCTGTTGAAGGGT
ACTTTGGTGCAAAACCTGCAAATACTCTTATTGTTGGGGGAACTGGTTCGGGTAAAACTACAACTTTAAACGTTGTTTCA
ATGTTTTCGATGTATACGGATAGACTTGTAACTATTGAAGATACTCCAGAGTTACAGGTTCCACTAACGCACCTGATAAA
AATGATTACAAGACCTGGAAGACCGGGTATTCAGGGTTATGAAATCACGATGGATGATTTGATTAAAAATTCCTTAAGGA
TGAGGCCTGACAGGATATTTGTAGGGGAAGTTAGGGGTAGTGAAGCCCATTCGTTGCTTGTTGCTATGAACACCGGGCAC
GATGGATGTTCCGGAACTCTGCACGCAAACAGCGCAGATGAAGCACTTATCAGGTTAATAAACCCACCTATGAACGTTCC
AAAAGTTATGATGTCTTCAGTTGATTTTATCATAAACCAGCAGCGTATTAAACGTAATAAAAAAACTGTTAGAAGAATCC
TCGGTGTTGTTGAAATCGGGGGAAGTGGGGAAAATATTACAAAAACTGAGCTCTTTAAATACGATGGAATAAGCGACAGT
GTTGTAAAAACAGGAATTTGTATGTGGGAAGAAGACGTGTGCCAGATTGCAGGTATCACGAGAGATGAATTAATGGACGA
TAGAATCAATAGAAAGAAAGTACTAAAATATATGGTGAACAACAATATTAATGATATTAGAAAAGTAGGGGATGTACTTA
AGCAATATCAGGAAAATCCAGAAAATGTCTTGAAAAACATTCTGGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(176-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6M177

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanococcus maripaludis strain DSM 2067

100

100

1

Multiple sequence alignment