Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MMP_RS00240 Genome accession   NC_005791
Coordinates   54975..55871 (-) Length   298 a.a.
NCBI ID   WP_011169982.1    Uniprot ID   Q6M179
Organism   Methanococcus maripaludis S2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 49975..60871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMP_RS00215 (MMP0033) - 50520..51746 (+) 1227 WP_011169977.1 AAA family ATPase -
  MMP_RS00220 (MMP0034) mptA 51767..52714 (+) 948 WP_011169978.1 GTP cyclohydrolase MptA -
  MMP_RS00225 (MMP0035) - 52740..53789 (+) 1050 WP_011169979.1 ATP-grasp domain-containing protein -
  MMP_RS00230 (MMP0036) tfe 53793..54350 (+) 558 WP_011169980.1 transcription factor E -
  MMP_RS00235 (MMP0037) - 54430..54948 (+) 519 WP_394295962.1 HDIG domain-containing metalloprotein -
  MMP_RS00240 (MMP0038) epdJ 54975..55871 (-) 897 WP_011169982.1 type II secretion system F family protein Machinery gene
  MMP_RS00245 (MMP0039) epdK 55876..56934 (-) 1059 WP_011169983.1 type II secretion system F family protein Machinery gene
  MMP_RS00250 (MMP0040) epdL 56946..58595 (-) 1650 WP_011169984.1 type II/IV secretion system ATPase subunit Machinery gene
  MMP_RS00255 (MMP0041) - 58605..59624 (-) 1020 WP_011169985.1 transcription initiation factor IIB -
  MMP_RS00260 (MMP0042) - 59643..59924 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32782.45 Da        Isoelectric Point: 9.9536

>NTDB_id=23227 MMP_RS00240 WP_011169982.1 54975..55871(-) (epdJ) [Methanococcus maripaludis S2]
MDAKKYLDHIYHVLIVRNIKILKKTGRKLDERVFIGILLVITILPILLKIFLGFTLKTTLILTFVYLGSVLSLPTIMYES
KMDKFDKNIPKALYVMVLSLDSGRSVVEAINEVIRSGIPEVDVVFSKIVTLMTERKLSFEDAMILVSNSLDSKIFRQVGR
LIIENRKYGGELADTLKKLAKTLDDLQNLKSQLLSVTANGLAVGLIILCGVIPATAGLIGGYLTVISQLAPTMPSVEASQ
ISKAIETIQMGSGLFGLFFAVPLFGLKVNRMIITCAVCMTFAIGTFYAVLRLTGLLFA

Nucleotide


Download         Length: 897 bp        

>NTDB_id=23227 MMP_RS00240 WP_011169982.1 54975..55871(-) (epdJ) [Methanococcus maripaludis S2]
ATGGATGCCAAAAAATACCTAGATCATATATATCATGTTTTAATTGTACGAAATATTAAGATATTAAAAAAAACAGGTAG
AAAACTTGATGAACGAGTTTTTATCGGAATATTATTGGTTATAACGATTTTACCAATATTGTTAAAAATATTTTTAGGTT
TCACCTTAAAAACTACCTTGATTTTAACTTTTGTATATTTAGGATCCGTTCTTTCACTCCCGACGATTATGTATGAATCT
AAAATGGATAAATTCGACAAAAATATACCTAAAGCATTATACGTCATGGTTTTGTCACTTGATTCCGGACGTTCTGTTGT
TGAAGCAATTAATGAAGTTATAAGAAGTGGAATTCCTGAAGTGGACGTAGTTTTTTCAAAAATTGTTACATTAATGACTG
AAAGAAAATTGAGTTTTGAAGATGCAATGATACTTGTTTCAAATTCTCTTGATTCAAAAATATTCAGGCAGGTTGGAAGG
TTAATCATTGAAAATAGAAAATATGGTGGAGAGCTTGCAGACACTCTGAAAAAACTTGCAAAAACACTTGACGACCTTCA
AAATTTAAAATCCCAACTTTTAAGTGTCACTGCAAACGGTCTTGCAGTGGGCCTTATAATTCTCTGTGGTGTGATTCCTG
CAACTGCTGGTTTGATTGGGGGTTATTTAACAGTAATATCTCAGTTAGCACCAACAATGCCATCAGTTGAAGCTTCACAA
ATATCAAAGGCGATTGAAACGATACAGATGGGTTCTGGATTATTTGGGCTGTTTTTTGCGGTTCCATTATTTGGTTTAAA
AGTAAATAGAATGATAATTACGTGTGCAGTATGTATGACTTTTGCGATCGGCACATTTTATGCAGTATTGAGACTTACCG
GACTGTTATTTGCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(94-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6M179

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

99.664

100

0.997

Multiple sequence alignment