Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CCX87_RS00770 Genome accession   NZ_CP021648
Coordinates   176416..177795 (+) Length   459 a.a.
NCBI ID   WP_087743016.1    Uniprot ID   -
Organism   Acidovorax sp. T1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 171416..182795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX87_RS00750 - 171935..172846 (+) 912 WP_087743006.1 transglycosylase SLT domain-containing protein -
  CCX87_RS00755 - 172994..174574 (+) 1581 WP_087743008.1 ABC transporter substrate-binding protein -
  CCX87_RS00760 - 174648..175271 (-) 624 WP_087743011.1 glutathione S-transferase family protein -
  CCX87_RS00765 hpaI 175470..176300 (-) 831 WP_087743014.1 4-hydroxy-2-oxoheptanedioate aldolase -
  CCX87_RS00770 radA 176416..177795 (+) 1380 WP_087743016.1 DNA repair protein RadA Machinery gene
  CCX87_RS00775 - 177875..178309 (+) 435 WP_086911002.1 glycerate kinase -
  CCX87_RS00780 - 178353..179303 (+) 951 WP_087743017.1 branched-chain amino acid transaminase -
  CCX87_RS00785 - 179306..179512 (+) 207 WP_087743020.1 zinc-finger domain-containing protein -
  CCX87_RS00790 - 179516..180331 (+) 816 WP_087748102.1 glycosyltransferase family 2 protein -
  CCX87_RS00795 - 180331..181584 (+) 1254 WP_087743022.1 O-antigen ligase family protein -
  CCX87_RS00800 - 181599..182573 (+) 975 WP_087743023.1 glycosyltransferase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48034.44 Da        Isoelectric Point: 6.9437

>NTDB_id=232241 CCX87_RS00770 WP_087743016.1 176416..177795(+) (radA) [Acidovorax sp. T1]
MAKDKTTFTCTECGGTSPRWLGKCPSCNAWNTLIESVADAGPGKNRYSGAQFAGLAQAQAVMPLAAIEATDIARTPSGID
ELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQALDALQRAGLPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQLEK
ILATIESMQPAVAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRCAKASGVAIVLVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSEPVPGSCVMVTLEGTRPLLVEIQALVDSG
GPSPRRLSVGLDKDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKALPQGFIAFGEVGL
AGEVRPAPRGQERLREAAKLGFSVAVVPKANAPKKPIEGLTIHAVERVEEAMNVVRGMG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=232241 CCX87_RS00770 WP_087743016.1 176416..177795(+) (radA) [Acidovorax sp. T1]
ATGGCCAAAGACAAAACCACGTTCACCTGCACCGAGTGCGGCGGCACCAGCCCGCGATGGCTGGGCAAATGCCCATCGTG
CAACGCCTGGAACACGCTGATCGAATCGGTGGCAGATGCCGGGCCCGGCAAAAACCGCTACAGCGGCGCACAGTTTGCCG
GGCTGGCGCAGGCGCAGGCCGTGATGCCGCTGGCGGCCATCGAGGCGACCGACATCGCGCGCACGCCCAGTGGTATCGAC
GAACTGGACCGCGTGCTGGGCGGGGGTATCGTCGAAGGCGGTGTGGTGTTGATTGGTGGTGACCCGGGCATTGGCAAGTC
CACGCTGCTGCTGCAGGCGCTGGACGCGCTGCAGCGCGCCGGCCTGCCCACCCTGTATGTGACCGGCGAAGAAAGCGGCG
CCCAGGTGGCGCTGCGCTCGCGCCGGCTGGGGCTGGACCACAGCCAGGTGAACGTGCTGGCAGAGATCCAGCTGGAAAAA
ATCCTGGCCACCATCGAATCCATGCAACCGGCGGTGGCAGTGATCGACTCGATCCAGACGGTGTATTCCGACCAGCTCAC
GTCGGCACCCGGCTCTGTGGCCCAGGTGCGCGAGTGCGCGGCGCACCTCACACGCTGCGCCAAGGCATCGGGCGTGGCCA
TCGTGCTGGTGGGCCATGTGACCAAGGAGGGTGCGCTGGCCGGGCCCCGCGTGCTGGAGCACATGGTGGACACGGTGCTG
TATTTCGAAGGCGATACGCACAGCCAGTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGTGCCGTCAACGAGATCGG
CGTGTTCGCCATGACCGAGAAGGGCCTCAAGGGGGTCAGTAACCCCAGCGCCATCTTTCTGAGCCAGCACAGTGAGCCCG
TGCCGGGCAGTTGTGTGATGGTCACGCTCGAAGGCACCCGGCCTTTGCTGGTCGAAATACAGGCTCTGGTGGACAGTGGC
GGCCCCAGCCCGCGGCGCCTGAGTGTGGGCCTGGACAAGGATCGCCTTGCCATGCTGCTGGCTGTGCTGCACCGCCATGC
GGGCGTGGCCTGCATGGACCAGGACGTGTTTGTGAATGCCGTGGGTGGCGTGCGCATCAGCGAGCCCGCCGCCGACCTGG
CCGTGATGCTGGCCATCACCTCCAGCCTGCGGGGCAAGGCATTGCCGCAGGGGTTCATCGCCTTTGGCGAGGTAGGGCTG
GCGGGCGAGGTGCGCCCCGCGCCCCGCGGCCAGGAGCGCCTGCGCGAGGCGGCCAAGCTGGGCTTCAGCGTGGCGGTGGT
GCCCAAGGCCAATGCCCCCAAAAAACCGATCGAGGGCCTGACCATCCACGCCGTGGAGCGCGTGGAAGAGGCCATGAACG
TGGTGCGCGGGATGGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.488
  radA Streptococcus mitis NCTC 12261

46.137

98.693

0.455
  radA Streptococcus mitis SK321

47.907

93.682

0.449
  radA Streptococcus pneumoniae Rx1

47.907

93.682

0.449
  radA Streptococcus pneumoniae D39

47.907

93.682

0.449
  radA Streptococcus pneumoniae R6

47.907

93.682

0.449
  radA Streptococcus pneumoniae TIGR4

47.907

93.682

0.449

Multiple sequence alignment