Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   B1L02_RS13190 Genome accession   NZ_CP021646
Coordinates   2838705..2839583 (+) Length   292 a.a.
NCBI ID   WP_088531399.1    Uniprot ID   A0AAD0W2V7
Organism   Pseudoalteromonas piscicida strain DE2-B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2833705..2844583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1L02_RS13170 (B1L02_13170) nadC 2834319..2835161 (+) 843 WP_088532285.1 carboxylating nicotinate-nucleotide diphosphorylase -
  B1L02_RS13175 (B1L02_13175) - 2835817..2836290 (+) 474 WP_088531396.1 pilin -
  B1L02_RS13180 (B1L02_13180) - 2836302..2837342 (+) 1041 WP_157757243.1 hypothetical protein -
  B1L02_RS13185 (B1L02_13185) pilC 2837344..2838570 (+) 1227 WP_088531398.1 type II secretion system F family protein Machinery gene
  B1L02_RS13190 (B1L02_13190) pilD 2838705..2839583 (+) 879 WP_088531399.1 prepilin peptidase Machinery gene
  B1L02_RS13195 (B1L02_13195) coaE 2839593..2840222 (+) 630 WP_088531400.1 dephospho-CoA kinase -
  B1L02_RS13200 (B1L02_13200) pilB 2840332..2842007 (+) 1676 Protein_2549 type IV-A pilus assembly ATPase PilB -
  B1L02_RS13205 (B1L02_13205) katG 2842353..2844536 (-) 2184 WP_088531401.1 catalase/peroxidase HPI -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32489.80 Da        Isoelectric Point: 6.6755

>NTDB_id=232225 B1L02_RS13190 WP_088531399.1 2838705..2839583(+) (pilD) [Pseudoalteromonas piscicida strain DE2-B]
MQDIINLMQTQLWYWLLTVGLVSLCIGSFLNVVILRLPKMMKQSWQSECRVLLADELPKQTAEAPVFNLIKPNSHCPSCK
TPIKAWQNIPLISWLLLKGKCNHCDASISVRYPLVELTTSLLSTWVAWHFGATLEATMYIVITWVLVALTVIDIDEMLLP
DQLTLPTLWLVLVASCFGVGIDPNSAIIGAAVGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAIFGALMGWQAILTIVLLS
SLVGAIIGSIQLSVQGRDKATPIPFGPYLAIAGWITLMYGEQLQLWYVNLIM

Nucleotide


Download         Length: 879 bp        

>NTDB_id=232225 B1L02_RS13190 WP_088531399.1 2838705..2839583(+) (pilD) [Pseudoalteromonas piscicida strain DE2-B]
ATGCAAGATATTATCAACTTGATGCAAACCCAGTTATGGTATTGGTTACTCACCGTTGGACTCGTTAGTCTTTGCATCGG
CAGCTTTCTCAATGTGGTTATTCTTCGCTTACCTAAAATGATGAAGCAGAGCTGGCAGTCAGAATGTCGCGTGTTGCTCG
CTGATGAGCTACCAAAACAAACCGCTGAAGCACCTGTTTTTAATTTAATTAAGCCAAACTCTCATTGCCCCAGCTGCAAA
ACGCCGATTAAGGCGTGGCAAAACATTCCACTGATCAGTTGGCTATTATTAAAAGGCAAATGCAACCACTGCGACGCGTC
AATCTCTGTCCGCTATCCTTTGGTAGAGCTAACAACCTCCCTACTCTCCACATGGGTTGCGTGGCATTTTGGTGCCACTT
TAGAAGCCACGATGTATATTGTGATTACTTGGGTATTAGTCGCACTTACGGTTATCGATATCGACGAAATGTTGCTGCCC
GATCAGTTAACGCTACCAACCTTATGGTTAGTGCTGGTTGCCAGTTGTTTTGGTGTTGGCATCGACCCCAATAGTGCCAT
TATTGGTGCAGCGGTTGGTTATTTAAGTTTATGGAGTGTGTATTGGCTCTTTAAATTACTCACAGGTAAAGAAGGCATGG
GCTATGGCGACTTTAAACTGCTGGCCATCTTTGGCGCATTAATGGGCTGGCAAGCAATCTTAACCATAGTGCTACTTTCA
AGTCTGGTCGGCGCAATCATTGGTAGCATCCAATTAAGCGTTCAAGGCCGAGATAAAGCCACGCCTATTCCGTTTGGTCC
TTACTTAGCCATTGCAGGTTGGATCACTCTAATGTATGGCGAACAGCTGCAGCTGTGGTACGTAAACCTAATAATGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

53.979

98.973

0.534
  pilD Acinetobacter nosocomialis M2

53.979

98.973

0.534
  pilD Vibrio cholerae strain A1552

51.786

95.89

0.497
  pilD Vibrio campbellii strain DS40M4

49.828

99.658

0.497
  pilD Neisseria gonorrhoeae MS11

43.939

90.411

0.397

Multiple sequence alignment