Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VV1_RS03985 Genome accession   NC_004459
Coordinates   832868..833542 (-) Length   224 a.a.
NCBI ID   WP_011078895.1    Uniprot ID   Q7MPS7
Organism   Vibrio vulnificus CMCP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 827868..838542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS03960 (VV1_0820) - 828393..830369 (-) 1977 WP_011078890.1 alkaline phosphatase family protein -
  VV1_RS03965 (VV1_0821) mutM 830516..831325 (-) 810 WP_011078891.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  VV1_RS03970 (VV1_0822) - 831355..831852 (-) 498 WP_011078892.1 hypothetical protein -
  VV1_RS03975 (VV1_0823) rpmG 832134..832304 (-) 171 WP_011078893.1 50S ribosomal protein L33 -
  VV1_RS03980 (VV1_0824) rpmB 832320..832556 (-) 237 WP_011078894.1 50S ribosomal protein L28 -
  VV1_RS03985 (VV1_0825) radC 832868..833542 (-) 675 WP_011078895.1 DNA repair protein RadC Machinery gene
  VV1_RS03990 (VV1_0826) - 833656..835323 (-) 1668 WP_011078896.1 methyl-accepting chemotaxis protein -
  VV1_RS03995 (VV1_0828) coaBC 835605..836810 (+) 1206 WP_011078897.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  VV1_RS04000 (VV1_0829) slmA 836961..837551 (+) 591 WP_011078898.1 nucleoid occlusion factor SlmA -
  VV1_RS04005 (VV1_0830) - 837555..838493 (+) 939 WP_011078899.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25340.02 Da        Isoelectric Point: 7.5165

>NTDB_id=23219 VV1_RS03985 WP_011078895.1 832868..833542(-) (radC) [Vibrio vulnificus CMCP6]
MSLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=23219 VV1_RS03985 WP_011078895.1 832868..833542(-) (radC) [Vibrio vulnificus CMCP6]
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGAGAAAAGTTGCTTCAGCGAGGGCCTCAATCTTTGTCTGATGC
CGAGTTGCTTGCGATCTTTTTGCGAACAGGCACACAAGGAATGAACGTAATTGAACTTGCCGATTTTTTATTGCGAGACT
TTGGCTCGCTGAGAAAACTGTTTTCCGCCGATGAACAGAGCTTTTGCCGTCACAAAGGATTGGGGCAGGCAAAATACGTT
CAATTACAAGCTGTTTTGGAAATGACGCAACGTTATTTGGCCGAAACATTGCAACGTGGTGATGCGCTCACCAGTCCACA
GCACACTAAGCTTTATCTCTCTTCCATGCTGCGCGATCGCCATCGAGAAGCGTTTTATGTGTTGTTCCTCGATAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGCACCATCGATGCCGCCTCGGTCTATCCTCGGGAAGTTGTTAAAAGA
GCCTTACACTATAATGCGGCAGCTTTAATATTGGCGCACAACCATCCCTCAGGCGTAGCAGAGCCAAGCCAAGCAGATCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTGGACCACTTTGTGGTGGGCGATGGGG
AAGTGGTTTCCTTTGCAGAAAGAGGCTGGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(4-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MPS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.241

96.429

0.513
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.375

Multiple sequence alignment