Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6N65_RS26475 Genome accession   NZ_CP027325
Coordinates   4966440..4967177 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C-4830     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4961440..4972177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N65_RS26460 clpC 4961894..4964467 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6N65_RS26465 yfiH 4964597..4965328 (-) 732 WP_000040142.1 purine nucleoside phosphorylase YfiH -
  C6N65_RS26470 rluD 4965325..4966305 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6N65_RS26475 comL 4966440..4967177 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6N65_RS26485 raiA 4967448..4967789 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6N65_RS26490 pheL 4967893..4967940 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6N65_RS26495 pheA 4968040..4969200 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6N65_RS26500 tyrA 4969243..4970364 (-) 1122 WP_032207548.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6N65_RS26505 aroF 4970375..4971445 (-) 1071 WP_032207549.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6N65_RS26510 yfiL 4971655..4972020 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=232180 C6N65_RS26475 WP_000197686.1 4966440..4967177(+) (comL) [Escherichia coli strain 2013C-4830]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=232180 C6N65_RS26475 WP_000197686.1 4966440..4967177(+) (comL) [Escherichia coli strain 2013C-4830]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376