Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CCS77_RS06595 Genome accession   NZ_CP021642
Coordinates   1314464..1315234 (-) Length   256 a.a.
NCBI ID   WP_107916926.1    Uniprot ID   A0A2R4P129
Organism   Campylobacter concisus strain P2CDO4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1309464..1320234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCS77_RS06555 (CCS77_1311) - 1309724..1309960 (+) 237 WP_107916923.1 helix-turn-helix domain-containing protein -
  CCS77_RS06560 (CCS77_1312) hemW 1310016..1311062 (+) 1047 WP_107916924.1 radical SAM family heme chaperone HemW -
  CCS77_RS06570 (CCS77_1314) tatB 1311130..1311528 (+) 399 WP_012140063.1 Sec-independent protein translocase protein TatB -
  CCS77_RS06575 (CCS77_1315) tatC 1311528..1312283 (+) 756 WP_107916925.1 twin-arginine translocase subunit TatC -
  CCS77_RS06580 (CCS77_1316) queA 1312276..1313298 (+) 1023 WP_107917305.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CCS77_RS06585 (CCS77_1317) - 1313295..1314089 (+) 795 WP_103573233.1 hypothetical protein -
  CCS77_RS06590 (CCS77_1318) ruvX 1314084..1314467 (-) 384 WP_004317765.1 Holliday junction resolvase RuvX -
  CCS77_RS06595 (CCS77_1319) dprA 1314464..1315234 (-) 771 WP_107916926.1 DNA-processing protein DprA Machinery gene
  CCS77_RS06600 (CCS77_1320) - 1315231..1316691 (-) 1461 WP_107916927.1 divergent polysaccharide deacetylase family protein -
  CCS77_RS06605 (CCS77_1321) ilvC 1316695..1317717 (-) 1023 WP_009294169.1 ketol-acid reductoisomerase -
  CCS77_RS06610 (CCS77_1323) - 1317865..1318683 (+) 819 WP_012140069.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 27788.28 Da        Isoelectric Point: 5.2243

>NTDB_id=232152 CCS77_RS06595 WP_107916926.1 1314464..1315234(-) (dprA) [Campylobacter concisus strain P2CDO4]
MKLEIIPEALNRLKNPPKELNFIGDTSLLSMPKVAVVGSRKASVYTKECVTALCAALKSANVCVVSGGAIGVDITAHKAA
MPLTIGVFANGLDIIYPAQNKVAIREIYEKGLALSEYDEGEPPIAYRFLERNRIVVGLAQALVVAQADLRSGSMQSARLA
NELKIPLFVLPQRINESSGTNALLASKKAELIDDYVKFASLFGEVKEQEKADDEILKFCKNGVSLDEALAKFGEIIYEYE
LDGLVEISNLRVKSAL

Nucleotide


Download         Length: 771 bp        

>NTDB_id=232152 CCS77_RS06595 WP_107916926.1 1314464..1315234(-) (dprA) [Campylobacter concisus strain P2CDO4]
ATGAAGCTTGAAATCATCCCAGAGGCGCTAAATAGGCTAAAAAATCCCCCAAAAGAGCTAAATTTCATAGGCGATACCTC
GCTTCTTAGCATGCCAAAAGTAGCAGTCGTTGGCTCAAGAAAGGCAAGCGTCTATACAAAAGAGTGTGTTACAGCACTTT
GCGCAGCGCTAAAAAGCGCAAATGTCTGCGTGGTAAGTGGTGGAGCTATCGGCGTGGATATCACGGCGCACAAGGCTGCC
ATGCCGCTAACTATCGGTGTTTTTGCAAATGGACTTGACATCATCTATCCAGCACAAAACAAAGTAGCGATAAGAGAAAT
TTATGAAAAAGGCTTGGCTCTAAGCGAGTATGACGAGGGCGAGCCACCGATCGCGTATAGATTTTTAGAGCGAAACCGCA
TAGTTGTGGGGCTTGCGCAAGCCCTTGTGGTCGCACAAGCTGATCTAAGAAGTGGCTCGATGCAAAGTGCAAGGCTTGCA
AATGAGCTTAAAATCCCTCTCTTTGTCCTGCCTCAGCGCATAAATGAGAGTAGTGGGACAAATGCCTTACTGGCTAGCAA
AAAGGCCGAGCTTATCGATGATTACGTTAAATTTGCCTCACTTTTTGGCGAGGTAAAAGAGCAAGAAAAAGCTGATGATG
AGATATTGAAATTTTGCAAAAATGGCGTTAGCCTTGATGAAGCATTGGCTAAATTTGGCGAGATCATCTATGAATACGAG
CTTGACGGGCTAGTTGAAATTTCAAATTTAAGAGTAAAAAGCGCGTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4P129

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.794

91.016

0.508
  dprA Helicobacter pylori 26695

45.418

98.047

0.445

Multiple sequence alignment