Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6N24_RS15085 Genome accession   NZ_CP027323
Coordinates   2817877..2818614 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2013C-3033     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2812877..2823614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N24_RS15070 clpC 2813331..2815904 (-) 2574 WP_106894505.1 ATP-dependent chaperone ClpB Regulator
  C6N24_RS15075 yfiH 2816034..2816765 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6N24_RS15080 rluD 2816762..2817742 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6N24_RS15085 comL 2817877..2818614 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6N24_RS15095 raiA 2818885..2819226 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6N24_RS15100 pheL 2819330..2819377 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  C6N24_RS15105 pheA 2819476..2820636 (+) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6N24_RS15110 tyrA 2820679..2821800 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6N24_RS15115 aroF 2821811..2822881 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6N24_RS15120 yfiL 2823091..2823456 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=232060 C6N24_RS15085 WP_000197686.1 2817877..2818614(+) (comL) [Escherichia coli strain 2013C-3033]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=232060 C6N24_RS15085 WP_000197686.1 2817877..2818614(+) (comL) [Escherichia coli strain 2013C-3033]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376