Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6N21_RS09185 Genome accession   NZ_CP027317
Coordinates   1725810..1726547 (+) Length   245 a.a.
NCBI ID   WP_000197674.1    Uniprot ID   -
Organism   Escherichia coli strain 2015C-3107     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720810..1731547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N21_RS09170 clpC 1721264..1723837 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6N21_RS09175 yfiH 1723967..1724698 (-) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  C6N21_RS09180 rluD 1724695..1725675 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6N21_RS09185 comL 1725810..1726547 (+) 738 WP_000197674.1 outer membrane protein assembly factor BamD Machinery gene
  C6N21_RS09195 raiA 1726818..1727159 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6N21_RS09200 pheL 1727263..1727310 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6N21_RS09205 pheA 1727408..1728568 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6N21_RS09210 tyrA 1728611..1729732 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6N21_RS09215 aroF 1729743..1730813 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6N21_RS09220 yfiL 1731022..1731387 (+) 366 WP_001370532.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27825.41 Da        Isoelectric Point: 6.4874

>NTDB_id=231970 C6N21_RS09185 WP_000197674.1 1725810..1726547(+) (comL) [Escherichia coli strain 2015C-3107]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
PDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=231970 C6N21_RS09185 WP_000197674.1 1725810..1726547(+) (comL) [Escherichia coli strain 2015C-3107]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTAAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
CCCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376