Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6N22_RS13360 Genome accession   NZ_CP027310
Coordinates   2590045..2590782 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2014C-4135     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2585045..2595782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N22_RS13325 yfiL 2585204..2585569 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  C6N22_RS13330 aroF 2585778..2586848 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6N22_RS13335 tyrA 2586859..2587980 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6N22_RS13340 pheA 2588023..2589183 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6N22_RS13345 pheL 2589282..2589329 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6N22_RS13350 raiA 2589433..2589774 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6N22_RS13360 comL 2590045..2590782 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6N22_RS13365 rluD 2590917..2591897 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6N22_RS13370 yfiH 2591894..2592625 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  C6N22_RS13375 clpC 2592755..2595328 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=231840 C6N22_RS13360 WP_000197686.1 2590045..2590782(-) (comL) [Escherichia coli strain 2014C-4135]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=231840 C6N22_RS13360 WP_000197686.1 2590045..2590782(-) (comL) [Escherichia coli strain 2014C-4135]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment