Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   CCD82_RS08165 Genome accession   NZ_CP021522
Coordinates   1458768..1459412 (-) Length   214 a.a.
NCBI ID   WP_002229027.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 06-178     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1453768..1464412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD82_RS08130 (CCD82_08295) ftsL 1454147..1454410 (-) 264 WP_002232818.1 cell division protein FtsL -
  CCD82_RS08135 (CCD82_08300) rsmH 1454407..1455393 (-) 987 WP_002229044.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  CCD82_RS08140 (CCD82_08305) mraZ 1455390..1455845 (-) 456 WP_002218779.1 division/cell wall cluster transcriptional repressor MraZ -
  CCD82_RS08145 (CCD82_08310) - 1456151..1457341 (+) 1191 WP_161976891.1 class I SAM-dependent methyltransferase -
  CCD82_RS08160 (CCD82_08330) - 1457914..1458735 (-) 822 WP_002222025.1 undecaprenyl-diphosphate phosphatase -
  CCD82_RS08165 (CCD82_08335) dsbA1 1458768..1459412 (-) 645 WP_002229027.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  CCD82_RS08170 (CCD82_08340) ftsN 1459415..1460278 (-) 864 WP_002229030.1 cell division protein FtsN -
  CCD82_RS08175 (CCD82_08345) comM 1460384..1461880 (-) 1497 WP_002229025.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CCD82_RS08180 (CCD82_08350) - 1461894..1462214 (-) 321 WP_002229037.1 accessory factor UbiK family protein -
  CCD82_RS08190 (CCD82_08360) putP 1462698..1464224 (+) 1527 WP_002229034.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23939.93 Da        Isoelectric Point: 9.8294

>NTDB_id=231792 CCD82_RS08165 WP_002229027.1 1458768..1459412(-) (dsbA1) [Neisseria meningitidis strain 06-178]
MKLKHLLPLLLSAALSAQAYALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=231792 CCD82_RS08165 WP_002229027.1 1458768..1459412(-) (dsbA1) [Neisseria meningitidis strain 06-178]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGCGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGTAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTCTGGCCAGGATGGCGGCTGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCCGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATACCGCATCGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAACGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

51.613

86.916

0.449

Multiple sequence alignment