Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CCD83_RS13235 Genome accession   NZ_CP021521
Coordinates   57692..57814 (-) Length   40 a.a.
NCBI ID   WP_307875761.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 09-292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52692..62814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS00310 (CCD83_00335) - 52786..52923 (-) 138 WP_002214606.1 VOC family protein -
  CCD83_RS00315 (CCD83_00340) carA 52969..54102 (-) 1134 WP_002260052.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  CCD83_RS00330 (CCD83_00355) pilC 54705..57695 (-) 2991 WP_149385320.1 PilC family type IV pilus tip adhesin Machinery gene
  CCD83_RS13235 pilC 57692..57814 (-) 123 WP_307875761.1 hypothetical protein Machinery gene
  CCD83_RS00340 (CCD83_00375) apbC 59071..60150 (-) 1080 WP_002257677.1 iron-sulfur cluster carrier protein ApbC -
  CCD83_RS00350 (CCD83_00385) - 60515..61024 (+) 510 WP_002229886.1 protein disulfide oxidoreductase -
  CCD83_RS00360 (CCD83_00395) nadR 61367..61807 (+) 441 WP_002221507.1 MarR family adhesin repressor NadR -
  CCD83_RS00365 (CCD83_00400) hpaC 61922..62422 (+) 501 WP_002229888.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 40 a.a.        Molecular weight: 4557.45 Da        Isoelectric Point: 12.8111

>NTDB_id=231762 CCD83_RS13235 WP_307875761.1 57692..57814(-) (pilC) [Neisseria meningitidis strain 09-292]
MNKTLKRRVFRHTALYAAILMFSHTGGGGRRRKPITTLLS

Nucleotide


Download         Length: 123 bp        

>NTDB_id=231762 CCD83_RS13235 WP_307875761.1 57692..57814(-) (pilC) [Neisseria meningitidis strain 09-292]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGCGCAGGCGCAAACCCATAACTACGCTATTGTCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

96.552

72.5

0.7

Multiple sequence alignment