Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CCD83_RS00330 Genome accession   NZ_CP021521
Coordinates   54705..57695 (-) Length   996 a.a.
NCBI ID   WP_149385320.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 09-292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 49705..62695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS00295 (CCD83_00300) - 50377..50988 (-) 612 WP_002234297.1 hypothetical protein -
  CCD83_RS00305 (CCD83_00320) - 51836..52225 (-) 390 WP_002217956.1 endonuclease domain-containing protein -
  CCD83_RS00310 (CCD83_00335) - 52786..52923 (-) 138 WP_002214606.1 VOC family protein -
  CCD83_RS00315 (CCD83_00340) carA 52969..54102 (-) 1134 WP_002260052.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  CCD83_RS00330 (CCD83_00355) pilC 54705..57695 (-) 2991 WP_149385320.1 PilC family type IV pilus tip adhesin Machinery gene
  CCD83_RS13235 pilC 57692..57814 (-) 123 WP_307875761.1 hypothetical protein Machinery gene
  CCD83_RS00340 (CCD83_00375) apbC 59071..60150 (-) 1080 WP_002257677.1 iron-sulfur cluster carrier protein ApbC -
  CCD83_RS00350 (CCD83_00385) - 60515..61024 (+) 510 WP_002229886.1 protein disulfide oxidoreductase -
  CCD83_RS00360 (CCD83_00395) nadR 61367..61807 (+) 441 WP_002221507.1 MarR family adhesin repressor NadR -
  CCD83_RS00365 (CCD83_00400) hpaC 61922..62422 (+) 501 WP_002229888.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 996 a.a.        Molecular weight: 108988.90 Da        Isoelectric Point: 9.4220

>NTDB_id=231713 CCD83_RS00330 WP_149385320.1 54705..57695(-) (pilC) [Neisseria meningitidis strain 09-292]
MNEQNQPEVKQEGSYSTLREKDRERKFIYNKGRSGGGSVSFNNSDELVSRQSGTAVFGTATYLPPYGKVSGFDADGLEKR
NNAAGWIRTTRIALAGYSYASVVCKSSTGCPKLVYKTRFSFDNPDLEKIGGRLDRHTDPSRDNSPIYKLKDHPWLGVSFN
LGSENTVKNGKSSSKLISSFNENNNNQTIVSTTEGDPISLGDQQREHTAVVYYLNAKLHLLDKKGIKDITDKTVQLGVLK
PSIDVKTQKTGFSGILSFWANWDIKDTGQIPVKLGLQQVKADRCINKQNPNPKSQAPSPALTAPALWFGPVQNGKVQMYS
ASVSTYPDSSSSQIFLQNLSRKDDTSKPGRYSLKPLSTSEIKSKEPNFTGRQTIIRLDGGVRHIQLDRNNEVTSFNDDNG
TFGIVKERSVVPESNEWKKVLLPWTVRGLDNDNQFKIFNQEAKDGKPKYSQRYRIRENGNNGNNGKRDLGDIVNSPIVAV
GGYLATSANDGMVHIFKKGNGGDERNYSLKLSYIPGTMPRKDIESQDSTLAKELRAFAEKGYVGDRYGVDGGFVLRQVER
NGKDHVFMFGAMGFGGRGAYALDLTKIDSNNLTGVSMFDVPNDKNNNKNDNNRVELGYTVGTPQIGKTHDGKYAAFLASG
YATKTIDDQQNKTALYVYDLESSGTLIKKIDVPGGKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSSDNPSSWTV
RTIFSGNKPITSAPAISQLKDKRVVIFGTGSDLSEDDVDKTDEQYIYGIFDDDTATTGPVNFSGTGGGLLEQVLSEENKT
LFLTDYKRSNGSGSKGWMVKLQPGQRVTVKPTVVLRTAFVTIRKYTDNGCGAETAILGINTADGGKLTKKSARPIVPEAN
SKVAQYSGDKKTSSGKSIPIGCMEKDNGIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPDGKRSGKNNRC
FSQKGVRTLLMNDLDSLDITGPTCGMKRISWREVFY

Nucleotide


Download         Length: 2991 bp        

>NTDB_id=231713 CCD83_RS00330 WP_149385320.1 54705..57695(-) (pilC) [Neisseria meningitidis strain 09-292]
ATGAACGAACAAAATCAGCCGGAGGTAAAGCAGGAGGGTTCATATTCAACCTTAAGGGAAAAAGACAGGGAACGCAAATT
TATCTATAATAAAGGCCGATCGGGTGGAGGCTCTGTCTCATTCAACAATAGCGATGAGCTTGTTTCTCGACAAAGCGGTA
CTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATGCCGACGGGCTGGAAAAGCGC
AACAATGCCGCCGGTTGGATTCGTACCACCCGCATCGCGCTGGCAGGCTACAGCTACGCCAGTGTCGTATGCAAAAGCAG
CACAGGCTGTCCCAAACTTGTCTATAAAACCCGATTTTCCTTCGATAATCCCGACTTGGAAAAAATAGGAGGCAGGCTGG
ATAGGCACACAGACCCAAGCCGCGACAATTCGCCCATTTACAAATTGAAGGATCATCCATGGTTGGGCGTGTCTTTCAAT
TTGGGCAGCGAGAATACCGTCAAAAATGGCAAATCATCCAGCAAATTGATATCTTCTTTTAATGAAAACAATAATAATCA
AACCATCGTCTCTACGACAGAAGGTGACCCTATTTCCCTTGGCGACCAGCAGCGCGAACATACCGCCGTGGTCTATTATC
TGAACGCCAAACTGCACCTGCTGGACAAAAAAGGGATTAAAGATATCACCGACAAAACAGTGCAGTTGGGTGTCTTGAAG
CCGAGCATCGATGTGAAGACACAAAAGACGGGGTTTAGCGGCATTCTATCTTTTTGGGCTAATTGGGACATTAAAGATAC
CGGGCAGATTCCAGTCAAGCTCGGCCTGCAGCAAGTCAAAGCAGACCGCTGCATCAACAAACAGAACCCAAATCCCAAAT
CCCAAGCCCCTTCCCCCGCACTGACTGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCC
GCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCCAAATTTTCCTGCAAAACCTTTCCCGCAAGGATGACACAAGCAA
ACCGGGCCGCTATTCCCTCAAACCCTTGAGTACGTCGGAGATTAAAAGTAAAGAGCCGAATTTCACGGGGCGGCAAACAA
TCATCCGATTGGATGGCGGCGTACGGCATATCCAACTGGATAGAAACAATGAGGTCACTAGTTTTAATGACGACAACGGA
ACTTTCGGCATTGTTAAGGAAAGGAGCGTCGTTCCTGAAAGCAACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCG
GGGTTTAGATAATGACAATCAATTTAAAATATTTAACCAAGAAGCAAAAGACGGCAAGCCAAAATACAGCCAAAGATACC
GCATCCGCGAAAACGGCAACAACGGCAACAACGGCAAGCGTGATTTGGGCGACATCGTCAACAGCCCCATCGTGGCGGTC
GGCGGGTATTTGGCTACTTCCGCCAACGACGGGATGGTGCATATCTTCAAAAAAGGCAACGGCGGGGACGAGCGCAACTA
TAGTCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCAAGGATATTGAAAGCCAAGACTCCACCCTTGCCAAAGAGC
TGCGCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCAAGTCGAACGG
AATGGGAAAGACCATGTGTTTATGTTCGGCGCGATGGGCTTTGGCGGCAGAGGCGCGTATGCCTTGGATTTGACCAAAAT
CGACAGCAATAACCTGACCGGCGTTTCCATGTTTGATGTCCCAAACGACAAAAATAACAATAAGAATGACAATAATCGCG
TGGAATTAGGCTACACCGTCGGCACACCGCAAATCGGCAAAACCCACGACGGCAAATACGCCGCTTTCCTCGCCTCCGGT
TATGCGACTAAAACCATTGACGACCAACAAAATAAAACCGCGCTGTATGTGTATGATTTGGAAAGCAGCGGTACGCTGAT
TAAAAAAATCGATGTACCCGGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCG
ATATCGCCTATGCCGGCGATCGCGGCGGGAATATGTACCGCTTTGATTTGAGCAGCGACAATCCGTCCAGCTGGACTGTA
CGCACTATTTTCAGCGGCAACAAACCGATTACTTCCGCGCCCGCCATTTCCCAACTGAAAGACAAACGCGTGGTTATCTT
CGGCACGGGCAGCGATTTGAGTGAGGATGATGTTGATAAAACGGACGAACAATATATTTACGGTATCTTTGACGACGATA
CGGCGACGACGGGTCCTGTAAACTTCAGCGGTACGGGAGGCGGGCTGCTCGAGCAAGTGCTTAGTGAGGAAAATAAAACC
TTATTCCTGACCGATTACAAGCGATCCAACGGATCGGGCAGTAAGGGGTGGATGGTGAAATTGCAGCCCGGACAGCGCGT
TACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTAACCATCCGCAAATATACTGACAACGGCTGCGGCGCGGAAA
CCGCCATTTTGGGCATCAATACCGCCGACGGCGGCAAGCTGACCAAGAAAAGCGCGCGCCCGATTGTGCCGGAAGCCAAT
TCGAAGGTCGCGCAATATTCCGGCGATAAGAAAACTTCCAGCGGCAAATCCATCCCTATAGGTTGTATGGAAAAAGACAA
TGGAATCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTATCTGGATGAAAAGAAAACAGACGGAT
TTTCAACAACGGCAGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGACGGCAAGCGTTCCGGCAAAAACAACCGCTGC
TTCTCCCAAAAAGGGGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGACATTACCGGCCCGACGTGCGGTATGAA
ACGAATCAGCTGGCGTGAAGTCTTCTACTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(469-804)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

76.611

100

0.776

Multiple sequence alignment