Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   CCD83_RS02580 Genome accession   NZ_CP021521
Coordinates   450475..454089 (-) Length   1204 a.a.
NCBI ID   WP_101043595.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 09-292     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 445475..459089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS02555 (CCD83_02585) hemE 446577..447641 (+) 1065 WP_002230390.1 uroporphyrinogen decarboxylase -
  CCD83_RS12580 - 447629..447790 (-) 162 WP_153559597.1 hypothetical protein -
  CCD83_RS02560 (CCD83_02590) radA 447818..449197 (+) 1380 WP_002232082.1 DNA repair protein RadA Machinery gene
  CCD83_RS02570 (CCD83_02600) - 449473..449952 (-) 480 WP_002229253.1 DUF302 domain-containing protein -
  CCD83_RS02575 (CCD83_02605) - 450077..450436 (-) 360 WP_002229254.1 rhodanese-like domain-containing protein -
  CCD83_RS02580 (CCD83_02610) recB 450475..454089 (-) 3615 WP_101043595.1 exodeoxyribonuclease V subunit beta Machinery gene
  CCD83_RS02585 (CCD83_02615) - 454322..455230 (-) 909 WP_002217584.1 Dyp-type peroxidase -
  CCD83_RS02595 (CCD83_02625) - 455515..456342 (+) 828 WP_002213986.1 amino acid ABC transporter substrate-binding protein -
  CCD83_RS02600 (CCD83_02630) - 456332..457048 (+) 717 WP_002213985.1 amino acid ABC transporter permease -
  CCD83_RS02605 (CCD83_02635) - 457058..457813 (+) 756 WP_002222716.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134273.81 Da        Isoelectric Point: 6.0968

>NTDB_id=231724 CCD83_RS02580 WP_101043595.1 450475..454089(-) (recB) [Neisseria meningitidis strain 09-292]
MSAPIQAFDSLTVPIAGTNLIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKEIAELGDGALSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLIPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLKQAQRNAETS
WQTVCRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAA
VFAELQKLAGFGRDLNALEEAEEATTIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYNA
QQLHDFNQNESEILHWAESARTALDNWNKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNHNPAA
LHKWLGDQISLADNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRRAYACEKDGIAMLKRNW
RRVADNAPSGTNFAFTEDAPPPAAYRGNAGQTAEFAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAEIS
VAAMPSETPTASDGISIHNFPKGTQAGLCLHEILEDFKFGQAAAGQETLITDKLKKYGFEEIWLPAVAEMAEACRKTPLT
GAYGLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPEGNICVI
DYKSNHLGADASAYTRQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=231724 CCD83_RS02580 WP_101043595.1 450475..454089(-) (recB) [Neisseria meningitidis strain 09-292]
ATGTCTGCACCCATCCAAGCATTCGACTCGCTAACCGTCCCCATTGCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGAAAAACCTACGGCATTGCCGCCCTGTTTACGCGCCTGATTGTATTAGAACAAAAAAACGTCGAGCGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACCGCCGAGCTGAAAACACGCCTGCGCGCGCGTTTGGACGATGTGTTGCAGGTTTTAGAA
AGCAAAGAAATTGCCGAACTTGGAGACGGCGCGCTTTCAGACGGCATCGCCGCCTATTGTGCGGAACACCACAAAGGCGA
CACCTTCCTGCCCGCACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTCTTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTATCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCAATGATCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCAACGCCGAAACCTCA
TGGCAAACCGTCTGCCGCCTGCTGCCCGAGCTGGAAGCCGGCTTTTGGCGCATCCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACGCACGACAGACTCTTGAAACTTGCGTCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGGCTTCGGGCGCGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAACGAT
CCGGCTGCAACTGGATTTAATCGGATACCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGCCCGCTGTTTCTCGTCGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGGATATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATAGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
TAGGTTGTCGCCCAAACGTCCTGCCGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGAGGCCGTCTGAATTTC
AAAGGCTGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTACGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGACAGGTGCAAAGCGTCCTGCTTTCACGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCAGCATATTCGGCTATAACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATAAATACGGCATTTTCGCCGCTATGCAGCAATTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAACTATTTCCAACTGCTCGAACTGCTTGCTGCCGAAGACGCGCAAAACCACAACCCCGCCGCG
CTGCACAAATGGCTGGGCGACCAAATCAGCCTGGCCGACAACAACGGCGGCGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTATACTGCCCGTTTGCATGGG
ACGCACAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCAAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAATACGCCGACGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCAGAGGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCGACAACCCCCTCGCCTACCTGATCGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCGTGCCTATGCGTGTGAAAAAGACGGCATCGCGATGCTCAAACGCAACTGG
CGGCGCGTGGCGGACAACGCCCCTTCCGGCACAAATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCGG
CAACGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCAGATTCCGATTTGTCCGCCACACCAGCTTTA
CCGCCTTAAGCCGCCATACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAATCTCG
GTAGCCGCGATGCCGTCTGAAACGCCGACGGCTTCAGATGGCATATCGATACACAACTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACCCTCATCACCGACAAGC
TGAAAAAATACGGATTTGAAGAAATATGGCTGCCCGCCGTTGCCGAAATGGCGGAAGCCTGCCGCAAAACGCCGCTGACG
GGGGCATACGGCCTGTCCGACATCCCGCCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTACGCGATTGGTTTGCCCGCGACGACATCAGGCTGCCCGAAGTCTGCCGTGCCGCTGCCGAAACGCTAG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGACATGGTCTGCCAAGACCCCGAGGGAAATATCTGCGTCATC
GACTACAAATCAAACCATCTCGGCGCGGACGCATCCGCCTACACGCGGCAGGCGATGGACGAAGCCGTCGCGCACCACCA
CTATTACCTTCAGGCGCTGATTTACGCCGTTGCCGCCGCACGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(743-835)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-651)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1070-1182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

94.767

100

0.948

Multiple sequence alignment