Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CCD83_RS02560 Genome accession   NZ_CP021521
Coordinates   447818..449197 (+) Length   459 a.a.
NCBI ID   WP_002232082.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 09-292     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 442818..454197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS02540 (CCD83_02570) - 443178..443939 (+) 762 WP_002225427.1 uroporphyrinogen-III synthase -
  CCD83_RS02545 (CCD83_02575) - 443954..445288 (+) 1335 WP_002221197.1 uroporphyrinogen-III C-methyltransferase -
  CCD83_RS02550 (CCD83_02580) - 445285..446502 (+) 1218 WP_002226492.1 heme biosynthesis protein HemY -
  CCD83_RS02555 (CCD83_02585) hemE 446577..447641 (+) 1065 WP_002230390.1 uroporphyrinogen decarboxylase -
  CCD83_RS12580 - 447629..447790 (-) 162 WP_153559597.1 hypothetical protein -
  CCD83_RS02560 (CCD83_02590) radA 447818..449197 (+) 1380 WP_002232082.1 DNA repair protein RadA Machinery gene
  CCD83_RS02570 (CCD83_02600) - 449473..449952 (-) 480 WP_002229253.1 DUF302 domain-containing protein -
  CCD83_RS02575 (CCD83_02605) - 450077..450436 (-) 360 WP_002229254.1 rhodanese-like domain-containing protein -
  CCD83_RS02580 (CCD83_02610) recB 450475..454089 (-) 3615 WP_101043595.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49561.09 Da        Isoelectric Point: 7.3293

>NTDB_id=231723 CCD83_RS02560 WP_002232082.1 447818..449197(+) (radA) [Neisseria meningitidis strain 09-292]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSTVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=231723 CCD83_RS02560 WP_002232082.1 447818..449197(+) (radA) [Neisseria meningitidis strain 09-292]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTTGCCGCGCCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAGTCCCTCTCCACCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCTACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGTAAAGTGCTATACGTTTCCGGCGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAAGCAGCG
TTGAAACAGCATCAGCCCGAAGTCGTGGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
TTCTGTGTCGCAGGTGCGCGAGTGTGCCGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCTAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCACACGGCTTCACC
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGCCTTGCGATGCTGCTTGCCGTATTAAACCGCCACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTTTTAAACGCCGTCGGCGGTGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCGCTGCCCGAAAAAATGGTTGCATTTGGAGAAATCGGTTTGAGCGGTGAA
GTCCGCCCCGTCGCGCGCGGACAAGAGCGGCTCAAGGAAGCGGAAAAGCTCGGCTTTAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATTGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus pneumoniae Rx1

47.566

98.475

0.468
  radA Streptococcus pneumoniae D39

47.566

98.475

0.468
  radA Streptococcus pneumoniae R6

47.566

98.475

0.468
  radA Streptococcus pneumoniae TIGR4

47.566

98.475

0.468
  radA Streptococcus mitis SK321

47.45

98.257

0.466
  radA Streptococcus mitis NCTC 12261

47.45

98.257

0.466

Multiple sequence alignment