Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CCD83_RS02060 Genome accession   NZ_CP021521
Coordinates   374236..375039 (-) Length   267 a.a.
NCBI ID   WP_002221259.1    Uniprot ID   Q9JVB7
Organism   Neisseria meningitidis strain 09-292     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 369236..380039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS02055 (CCD83_02090) comA 371959..374178 (+) 2220 WP_153063436.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CCD83_RS02060 (CCD83_02095) comL 374236..375039 (-) 804 WP_002221259.1 outer membrane protein assembly factor BamD Machinery gene
  CCD83_RS02065 (CCD83_02100) rluD 375038..376162 (+) 1125 WP_002230370.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CCD83_RS02070 (CCD83_02105) - 376315..377262 (-) 948 WP_002229204.1 bile acid:sodium symporter family protein -
  CCD83_RS13340 - 377481..377654 (-) 174 Protein_352 IS5/IS1182 family transposase -
  CCD83_RS02090 (CCD83_02115) pgeF 377821..378600 (+) 780 WP_002230376.1 peptidoglycan editing factor PgeF -
  CCD83_RS02095 (CCD83_02120) lptE 378652..379131 (+) 480 WP_002217671.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30808.83 Da        Isoelectric Point: 8.9351

>NTDB_id=231721 CCD83_RS02060 WP_002221259.1 374236..375039(-) (comL) [Neisseria meningitidis strain 09-292]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=231721 CCD83_RS02060 WP_002221259.1 374236..375039(-) (comL) [Neisseria meningitidis strain 09-292]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
TCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCTTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCGCAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCCTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JVB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.502

100

0.985
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment