Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LJ_RS00040 | Genome accession | NC_005362 |
| Coordinates | 9213..9731 (+) | Length | 172 a.a. |
| NCBI ID | WP_011161251.1 | Uniprot ID | - |
| Organism | Lactobacillus johnsonii NCC 533 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4213..14731
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJ_RS00025 (LJ0004) | gyrB | 4229..6196 (+) | 1968 | WP_011161250.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| LJ_RS00030 (LJ0005) | gyrA | 6207..8696 (+) | 2490 | WP_004898285.1 | DNA gyrase subunit A | - |
| LJ_RS00035 (LJ0006) | rpsF | 8883..9179 (+) | 297 | WP_004896331.1 | 30S ribosomal protein S6 | - |
| LJ_RS00040 (LJ0007) | ssb | 9213..9731 (+) | 519 | WP_011161251.1 | single-stranded DNA-binding protein | Machinery gene |
| LJ_RS00045 (LJ0008) | rpsR | 9756..9992 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| LJ_RS00050 (LJ0009) | - | 10086..11003 (+) | 918 | WP_011161252.1 | magnesium transporter CorA family protein | - |
| LJ_RS00055 (LJ0010) | - | 11110..13128 (+) | 2019 | WP_011161253.1 | DHH family phosphoesterase | - |
| LJ_RS00060 (LJ0011) | rplI | 13140..13595 (+) | 456 | WP_003651632.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18573.30 Da Isoelectric Point: 4.7531
>NTDB_id=23172 LJ_RS00040 WP_011161251.1 9213..9731(+) (ssb) [Lactobacillus johnsonii NCC 533]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFISCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFISCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=23172 LJ_RS00040 WP_011161251.1 9213..9731(+) (ssb) [Lactobacillus johnsonii NCC 533]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGCGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAGCGTGGTGCTGATTTCATCAGCTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGATGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAAAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAATAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGCGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAGCGTGGTGCTGATTTCATCAGCTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGATGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAAAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAATAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCAGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.494 |
100 |
0.622 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
100 |
0.512 |