Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   C1N79_RS20430 Genome accession   NZ_CP027297
Coordinates   4546093..4547502 (-) Length   469 a.a.
NCBI ID   WP_019331015.1    Uniprot ID   A0ABW1Y0B3
Organism   Streptomyces sp. SGAir0924     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4541093..4552502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N79_RS20405 (C1N79_20415) - 4542546..4543211 (+) 666 WP_046251959.1 response regulator transcription factor -
  C1N79_RS20410 (C1N79_20420) - 4543218..4543844 (-) 627 WP_031021930.1 phosphatase PAP2 family protein -
  C1N79_RS35965 - 4544020..4544865 (+) 846 WP_062130456.1 hypothetical protein -
  C1N79_RS20425 (C1N79_20435) disA 4544887..4546011 (-) 1125 WP_029394644.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  C1N79_RS20430 (C1N79_20440) radA/sms 4546093..4547502 (-) 1410 WP_019331015.1 DNA repair protein RadA Machinery gene
  C1N79_RS20440 (C1N79_20450) - 4548081..4549898 (+) 1818 WP_137961346.1 sigma-70 family RNA polymerase sigma factor -
  C1N79_RS20445 (C1N79_20455) - 4549981..4550814 (-) 834 WP_137961347.1 hypothetical protein -
  C1N79_RS20450 (C1N79_20460) - 4550886..4551818 (+) 933 WP_029394664.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49849.94 Da        Isoelectric Point: 7.4629

>NTDB_id=231673 C1N79_RS20430 WP_019331015.1 4546093..4547502(-) (radA/sms) [Streptomyces sp. SGAir0924]
MAARAKTSKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRINAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPDGMKVLEVADMGDALRVLPRSRRREAPREEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=231673 C1N79_RS20430 WP_019331015.1 4546093..4547502(-) (radA/sms) [Streptomyces sp. SGAir0924]
ATGGCTGCCCGTGCGAAGACCAGCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGTCCCGAATGTCAGGCATGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGGACGACCACGCCGGGGC
GTGTCACCACGTCCGCGCTGCCGATCGGGCAGGTCGACGGACGGCAGGCCACCGCCCGCCCCACCGGTGTGCCCGAGCTG
GACCGGGTGCTCGGCGGGGGGCTGGTGCCCGGTGCCGTGGTGCTCGTCGCGGGTGAGCCCGGCGTCGGGAAGTCCACGCT
GCTGCTGGACGTCGCGGCCAAGTCGGCCAGTGACGAGCACCGGACGCTGTACGTCACGGGTGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGGGCCGACCGGATCAACGCCATCGACGACCACCTGTATCTCGCGGCCGAGACCGACCTCGCGGCGGTGCTC
GGGCATCTGGACGCCGTGAAGCCGTCGCTGTTGATCCTCGATTCCGTGCAGACGGTCGCCTCTCCCGAGATCGACGGGGC
GCCCGGCGGCATGGCGCAGGTGCGGGAGGTCGCGGGGGCGCTGATCCGGGCGTCGAAGGAACGGGGGATGTCGACGCTGC
TGGTGGGCCACGTCACCAAGGACGGGGCCATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGCATTTC
GAGGGGGACCGGCACGCGCGGCTGCGGCTGGTGCGGGGGGTCAAGAACCGGTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACGGGGCTGGCCGATCCCAGCGGGCTGTTCCTGACGCGGCGTGCCGAGCCGGTGCCCG
GGACCTGTCTGACGGTCACCCTGGAGGGGCGCCGGCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCCCCGCGGCGCACGACGTCCGGGCTGGAGACCTCGCGCGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGGCG
GATCAGCGCGCTCGGGAAGCGGGACATCTACTCGGCGACGGTCGGCGGTGTGAAGCTGTCCGAACCGGCCGCCGACCTGG
CGGTGGCGCTCGCGCTGGCGAGCGCCGCGAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTCGGTCTC
GCCGGTGAGGTGAGACGGGTCACGGGTGTGCAGCGCAGGCTCGCCGAGGCGCACCGCCTGGGCTTCACGCACGCCCTGGT
GCCGACCGATCCCGGCAGGGTCCCGGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGTGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGCCGAGAGGCCCCACGGGAGGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.826

96.588

0.414
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus mitis NCTC 12261

44.131

90.832

0.401
  radA Streptococcus mitis SK321

44.131

90.832

0.401

Multiple sequence alignment