Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   C1N79_RS09010 Genome accession   NZ_CP027297
Coordinates   2021229..2021870 (-) Length   213 a.a.
NCBI ID   WP_019329384.1    Uniprot ID   A0ABW1XVC8
Organism   Streptomyces sp. SGAir0924     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2016229..2026870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N79_RS08980 (C1N79_08995) - 2016636..2017142 (+) 507 WP_019329390.1 HNH endonuclease -
  C1N79_RS08985 (C1N79_09000) - 2017258..2018211 (-) 954 WP_030969524.1 SPFH domain-containing protein -
  C1N79_RS08990 (C1N79_09005) - 2018367..2018801 (-) 435 WP_019329388.1 NfeD family protein -
  C1N79_RS08995 (C1N79_09010) - 2018856..2019653 (-) 798 WP_029394204.1 ABC transporter ATP-binding protein -
  C1N79_RS09000 (C1N79_09015) - 2019806..2020594 (+) 789 WP_030969528.1 hypothetical protein -
  C1N79_RS09005 (C1N79_09020) chpE 2020828..2021073 (-) 246 WP_019329385.1 chaplin ChpE -
  C1N79_RS09010 (C1N79_09025) vraR 2021229..2021870 (-) 642 WP_019329384.1 response regulator transcription factor Regulator
  C1N79_RS09015 (C1N79_09030) - 2021863..2023008 (-) 1146 WP_019329383.1 GAF domain-containing sensor histidine kinase -
  C1N79_RS09020 (C1N79_09035) - 2023225..2023923 (+) 699 WP_137960813.1 SDR family oxidoreductase -
  C1N79_RS09025 (C1N79_09040) - 2023920..2024984 (+) 1065 WP_109203219.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  C1N79_RS09030 (C1N79_09045) - 2025339..2026046 (+) 708 WP_019329380.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23055.33 Da        Isoelectric Point: 5.1644

>NTDB_id=231641 C1N79_RS09010 WP_019329384.1 2021229..2021870(-) (vraR) [Streptomyces sp. SGAir0924]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAEELKPDVILMDVKMPGMDGVDALRRLRELDNRAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESTPGQGRAGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=231641 C1N79_RS09010 WP_019329384.1 2021229..2021870(-) (vraR) [Streptomyces sp. SGAir0924]
GTGGCTGACGCGATCAAGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGGGGTCTGCGCACCTTCCTGGAGGTACA
GGACGACATCGAGGTGGTGGGGGAGGCCGCGGACGGCGCCGAGGGAGTCGACCGCGCCGAGGAACTGAAGCCCGACGTGA
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGCGTGGACGCGCTGCGCAGACTCCGCGAGCTGGACAACCGGGCGCGT
GTGCTGATCGTGACCAGCTTCACCGAGCAGCGCACCGTGGTCCCGGCCCTGCGCGCGGGAGCCGCCGGGTACGTCTACAA
GGACGTCGACCCCGACGCGCTGGCGGGCGCCATCCGCTCCGTCCACGCCGGCCACATCCTGCTCCAGCCCGAGGTCGCCG
GCGCCCTGCTGTCCCAGGAGGAGAGCACCCCCGGCCAGGGCAGGGCGGGCTCCCTCACGGAGCGGGAGCGCGAGGTGCTG
GGCCTGATAGCGGACGGCCGCTCCAACCGCGAGATCGCGCGCGCCCTCGTCCTCTCCGAGAAGACCGTGAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTCGCGGACCGCACCCAGGCCGCGCTGTGGGCCGTACGCCACGGGGTCACCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.445

99.061

0.46
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.408

Multiple sequence alignment