Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   CCD85_RS03090 Genome accession   NZ_CP021519
Coordinates   530621..531214 (+) Length   197 a.a.
NCBI ID   WP_002229321.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 11-14     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525621..536214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD85_RS03060 (CCD85_03070) - 525928..526515 (-) 588 WP_002222659.1 superoxide dismutase -
  CCD85_RS03070 (CCD85_03080) dnaB 526678..528084 (+) 1407 WP_002219448.1 replicative DNA helicase -
  CCD85_RS03075 (CCD85_03085) pilH 528386..529054 (+) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD85_RS03080 (CCD85_03090) pilV 529084..529704 (+) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  CCD85_RS03085 (CCD85_03095) pilJ 529701..530642 (+) 942 WP_149488390.1 PilW family protein Machinery gene
  CCD85_RS03090 (CCD85_03100) pilK 530621..531214 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD85_RS03095 (CCD85_03105) pilX 531219..531692 (+) 474 WP_002229319.1 PilX family type IV pilin Machinery gene
  CCD85_RS03110 (CCD85_03120) - 533505..533933 (-) 429 Protein_527 AzlC family ABC transporter permease -
  CCD85_RS03115 (CCD85_03125) dut 534075..534527 (+) 453 WP_002229326.1 dUTP diphosphatase -
  CCD85_RS03120 (CCD85_03130) dapC 534604..535791 (+) 1188 WP_002259885.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21655.53 Da        Isoelectric Point: 7.5809

>NTDB_id=231632 CCD85_RS03090 WP_002229321.1 530621..531214(+) (pilK) [Neisseria meningitidis strain 11-14]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCPANSTNLCIDNKGTKYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=231632 CCD85_RS03090 WP_002229321.1 530621..531214(+) (pilK) [Neisseria meningitidis strain 11-14]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGAAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893

Multiple sequence alignment