Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6C13_RS02320 Genome accession   NZ_CP027255
Coordinates   479944..480681 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC11     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474944..485681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6C13_RS02305 (C6C13_02305) clpC 475398..477971 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C6C13_RS02310 (C6C13_02310) yfiH 478101..478832 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  C6C13_RS02315 (C6C13_02315) rluD 478829..479809 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6C13_RS02320 (C6C13_02320) comL 479944..480681 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6C13_RS02330 (C6C13_02330) raiA 480952..481293 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6C13_RS02335 (C6C13_02335) pheL 481397..481444 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  C6C13_RS02340 (C6C13_02340) pheA 481543..482703 (+) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6C13_RS02345 (C6C13_02345) tyrA 482746..483867 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6C13_RS02350 (C6C13_02350) aroF 483878..484948 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6C13_RS02355 (C6C13_02355) yfiL 485158..485523 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=231552 C6C13_RS02320 WP_000197686.1 479944..480681(+) (comL) [Escherichia coli strain EC11]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=231552 C6C13_RS02320 WP_000197686.1 479944..480681(+) (comL) [Escherichia coli strain EC11]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment