Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BJE04_RS14410 Genome accession   NC_005139
Coordinates   3068581..3069171 (-) Length   196 a.a.
NCBI ID   WP_011079353.1    Uniprot ID   -
Organism   Vibrio vulnificus YJ016     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3063581..3074171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS14385 (VV2988) aroB 3063854..3064945 (-) 1092 WP_011079358.1 3-dehydroquinate synthase -
  BJE04_RS14390 (VV2989) aroK 3064978..3065496 (-) 519 WP_011079357.1 shikimate kinase AroK -
  BJE04_RS14395 (VV2990) pilQ 3065698..3067482 (-) 1785 WP_011151276.1 type IV pilus secretin PilQ Machinery gene
  BJE04_RS14400 (VV2991) pilP 3067496..3068008 (-) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  BJE04_RS14405 (VV2992) pilO 3067998..3068588 (-) 591 WP_043877335.1 type 4a pilus biogenesis protein PilO Machinery gene
  BJE04_RS14410 (VV2993) pilN 3068581..3069171 (-) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  BJE04_RS14415 (VV2994) pilM 3069161..3070168 (-) 1008 WP_011151279.1 type IV pilus assembly protein PilM Machinery gene
  BJE04_RS14420 (VV2995) - 3070308..3072821 (+) 2514 WP_011151280.1 penicillin-binding protein 1A -
  BJE04_RS14425 (VV2996) oxyR 3072891..3073790 (-) 900 WP_043877336.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22672.91 Da        Isoelectric Point: 7.6441

>NTDB_id=23155 BJE04_RS14410 WP_011079353.1 3068581..3069171(-) (pilN) [Vibrio vulnificus YJ016]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=23155 BJE04_RS14410 WP_011079353.1 3068581..3069171(-) (pilN) [Vibrio vulnificus YJ016]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTTTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCTGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAGCATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

67.956

92.347

0.628
  pilN Vibrio cholerae strain A1552

63.277

90.306

0.571

Multiple sequence alignment