Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   S101441_RS19420 Genome accession   NZ_CP021507
Coordinates   3657297..3658019 (+) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101441     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3652297..3663019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101441_RS19395 (S101441_03918) degS 3652607..3653764 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  S101441_RS19400 (S101441_03919) degU 3653847..3654536 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  S101441_RS19405 (S101441_03920) fakBA 3654634..3655479 (+) 846 WP_014481053.1 DegV family protein -
  S101441_RS19410 (S101441_03921) comFA 3655586..3656977 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  S101441_RS19415 (S101441_03922) comFB 3657037..3657333 (+) 297 WP_003227989.1 late competence protein ComFB -
  S101441_RS19420 (S101441_03923) comFC 3657297..3658019 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  S101441_RS19425 (S101441_03924) yvyF 3658092..3658511 (+) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  S101441_RS19430 (S101441_03925) flgM 3658592..3658858 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  S101441_RS19435 (S101441_03926) flgN 3658874..3659356 (+) 483 WP_014481048.1 flagellar protein FlgN -
  S101441_RS19440 (S101441_03927) flgK 3659375..3660898 (+) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  S101441_RS19445 (S101441_03928) flgL 3660909..3661805 (+) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  S101441_RS19450 (S101441_03929) yviE 3661852..3662427 (+) 576 WP_014481045.1 DUF6470 family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=231504 S101441_RS19420 WP_014481051.1 3657297..3658019(+) (comFC) [Bacillus subtilis subsp. subtilis strain SRCM101441]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=231504 S101441_RS19420 WP_014481051.1 3657297..3658019(+) (comFC) [Bacillus subtilis subsp. subtilis strain SRCM101441]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment