Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   S101441_RS19400 Genome accession   NZ_CP021507
Coordinates   3653847..3654536 (+) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101441     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3648847..3659536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101441_RS19375 (S101441_03914) - 3649179..3649634 (-) 456 WP_014481057.1 hypothetical protein -
  S101441_RS19380 (S101441_03915) - 3649683..3650138 (-) 456 WP_046160907.1 hypothetical protein -
  S101441_RS19385 (S101441_03916) - 3650745..3651737 (-) 993 WP_014481056.1 LCP family protein -
  S101441_RS19390 (S101441_03917) - 3651737..3652390 (-) 654 WP_014481055.1 YigZ family protein -
  S101441_RS19395 (S101441_03918) degS 3652607..3653764 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  S101441_RS19400 (S101441_03919) degU 3653847..3654536 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  S101441_RS19405 (S101441_03920) fakBA 3654634..3655479 (+) 846 WP_014481053.1 DegV family protein -
  S101441_RS19410 (S101441_03921) comFA 3655586..3656977 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  S101441_RS19415 (S101441_03922) comFB 3657037..3657333 (+) 297 WP_003227989.1 late competence protein ComFB -
  S101441_RS19420 (S101441_03923) comFC 3657297..3658019 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  S101441_RS19425 (S101441_03924) yvyF 3658092..3658511 (+) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  S101441_RS19430 (S101441_03925) flgM 3658592..3658858 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  S101441_RS19435 (S101441_03926) flgN 3658874..3659356 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=231502 S101441_RS19400 WP_014481054.1 3653847..3654536(+) (degU) [Bacillus subtilis subsp. subtilis strain SRCM101441]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=231502 S101441_RS19400 WP_014481054.1 3653847..3654536(+) (degU) [Bacillus subtilis subsp. subtilis strain SRCM101441]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment