Detailed information NTG0023146

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BJE04_RS13405
• Genome accession: NC_005139
• Coordinates: 2867916..2868908 (-)
• Length: 330 a.a.
• NCBI ID: WP_011151147.1
• Uniprot ID: Q7MHR1
• Organism: Vibrio vulnificus YJ016
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2862916..2873908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJE04_RS13385 (VV2804)	recX	2862944..2863405 (-)	462	WP_011151143.1	recombination regulator RecX	-
BJE04_RS13390 (VV2805)	recA	2863509..2864558 (-)	1050	WP_011079524.1	recombinase RecA	Machinery gene
BJE04_RS13395 (VV2807)	pncC	2864692..2865195 (-)	504	WP_011151145.1	nicotinamide-nucleotide amidase	-
BJE04_RS13400 (VV2806)	mutS	2865279..2867840 (+)	2562	WP_043877315.1	DNA mismatch repair protein MutS	-
BJE04_RS13405 (VV2808)	rpoS	2867916..2868908 (-)	993	WP_011151147.1	RNA polymerase sigma factor RpoS	Regulator
BJE04_RS13410 (VV2810)	-	2868989..2869885 (-)	897	WP_039554645.1	peptidoglycan DD-metalloendopeptidase family protein	-
BJE04_RS13415 (VV2811)	-	2869929..2870555 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BJE04_RS13420 (VV2812)	surE	2870558..2871325 (-)	768	WP_011151150.1	5'/3'-nucleotidase SurE	-
BJE04_RS13425 (VV2813)	truD	2871331..2872374 (-)	1044	WP_026130623.1	tRNA pseudouridine(13) synthase TruD	-
BJE04_RS13430 (VV2814)	ispF	2872416..2872892 (-)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BJE04_RS13435 (VV2816)	ispD	2872889..2873602 (-)	714	WP_011151153.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BJE04_RS13440 (VV2817)	ftsB	2873602..2873883 (-)	282	WP_011079514.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38027.06 Da
• Isoelectric Point: 4.4761

>NTDB_id=23146 BJE04_RS13405 WP_011151147.1 2867916..2868908(-) (rpoS) [Vibrio vulnificus YJ016]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=23146 BJE04_RS13405 WP_011151147.1 2867916..2868908(-) (rpoS) [Vibrio vulnificus YJ016]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCAGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGAGGTTTCCGTTTCTCAACTTACGCGACATGGTGGATTCGCCAAACCATCGAACGCGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAACTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGCTCTGTCGATACACCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTACGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATAGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

3D structure

• AlphaFold DB: Q7MHR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.899	100	0.836