Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BJE04_RS13390 Genome accession   NC_005139
Coordinates   2863509..2864558 (-) Length   349 a.a.
NCBI ID   WP_011079524.1    Uniprot ID   Q7MHR4
Organism   Vibrio vulnificus YJ016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2858509..2869558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS13370 (VV2801) csrA 2858515..2858706 (-) 192 WP_011079528.1 carbon storage regulator CsrA -
  BJE04_RS13375 (VV2802) - 2858798..2859985 (-) 1188 WP_011151141.1 aspartate kinase -
  BJE04_RS13380 (VV2803) alaS 2860182..2862764 (-) 2583 WP_011151142.1 alanine--tRNA ligase -
  BJE04_RS13385 (VV2804) recX 2862944..2863405 (-) 462 WP_011151143.1 recombination regulator RecX -
  BJE04_RS13390 (VV2805) recA 2863509..2864558 (-) 1050 WP_011079524.1 recombinase RecA Machinery gene
  BJE04_RS13395 (VV2807) pncC 2864692..2865195 (-) 504 WP_011151145.1 nicotinamide-nucleotide amidase -
  BJE04_RS13400 (VV2806) mutS 2865279..2867840 (+) 2562 WP_043877315.1 DNA mismatch repair protein MutS -
  BJE04_RS13405 (VV2808) rpoS 2867916..2868908 (-) 993 WP_011151147.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37738.34 Da        Isoelectric Point: 4.8857

>NTDB_id=23144 BJE04_RS13390 WP_011079524.1 2863509..2864558(-) (recA) [Vibrio vulnificus YJ016]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSYNGDKIGQGKANACKYLKENVDVAKVLDT
KLREMLLSPANINDESAELVEEMPEQEEF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=23144 BJE04_RS13390 WP_011079524.1 2863509..2864558(-) (recA) [Vibrio vulnificus YJ016]
ATGGACGAGAACAAACAGAAGGCACTGGCCGCCGCACTAGGTCAAATTGAAAAGCAGTTCGGTAAAGGTTCAATCATGCG
CCTAGGTGACAACCGTGCGATGGATGTTGAAACCATCTCGACAGGTTCACTATCTCTGGATATTGCGCTGGGTGCTGGTG
GCTTACCAATGGGCCGTATCGTTGAAATTTTTGGTCCAGAATCTTCAGGTAAAACCACGTTGACCCTTGAGCTGATCGCT
GCGGCTCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCCGAGCACGCGTTGGATCCTGTGTATGCGAAGAAGCTTGG
CGTTAATATCGACCAGTTGTTGGTATCTCAGCCTGACACCGGTGAACAAGCATTGGAAATCTGTGATGCTCTTGCTCGCT
CAGGTGCGGTTGACGTTATTGTTGTCGACTCTGTTGCAGCATTGACGCCAAAGGCAGAAATCGAAGGTGAGATGGGCGAC
TCGCACATGGGTCTTCAAGCTCGTATGCTATCTCAAGCGATGCGTAAGTTAACGGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAACCCAGAAACCACAACGGGTGGTAATGCTC
TGAAATTCTACGCTTCTGTTCGTCTTGATATTCGCCGTACTGGTGCGATCAAAGAAGGTGATGAGGTCGTGGGTAACGAA
ACGCGCATCAAAGTGGTGAAGAATAAGATCGCTGCGCCGTTTAAAGAAGCCAACACTCAAATTATGTACGGCCAAGGCTT
TAACCGCGAAGGTGAACTGATTGACCTAGGCGTGAAATGTAAGCTGATTGAAAAATCAGGCGCTTGGTACAGCTATAACG
GCGACAAAATTGGCCAAGGTAAAGCGAACGCTTGTAAATACCTGAAAGAAAACGTAGATGTCGCAAAAGTACTGGATACG
AAATTGCGTGAAATGTTGCTTTCTCCAGCAAACATCAACGATGAATCGGCAGAGTTAGTCGAAGAAATGCCAGAGCAAGA
AGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

96.084

95.129

0.914
  recA Vibrio cholerae O1 biovar El Tor strain E7946

96.084

95.129

0.914
  recA Pseudomonas stutzeri DSM 10701

74.398

95.129

0.708
  recA Glaesserella parasuis strain SC1401

69.492

100

0.705
  recA Acinetobacter baylyi ADP1

70.145

98.854

0.693
  recA Acinetobacter baumannii D1279779

73.171

93.983

0.688
  recA Neisseria gonorrhoeae MS11

65.805

99.713

0.656
  recA Neisseria gonorrhoeae MS11

65.805

99.713

0.656
  recA Neisseria gonorrhoeae strain FA1090

65.805

99.713

0.656
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.112

0.633
  recA Helicobacter pylori strain NCTC11637

59.884

98.567

0.59
  recA Helicobacter pylori 26695

59.593

98.567

0.587
  recA Streptococcus pneumoniae Rx1

58.571

100

0.587
  recA Streptococcus pneumoniae R6

58.571

100

0.587
  recA Streptococcus pneumoniae D39

58.571

100

0.587
  recA Streptococcus pneumoniae TIGR4

58.571

100

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.241

90.544

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

91.977

0.582
  recA Streptococcus mitis SK321

61.92

92.55

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.842

0.573
  recA Lactococcus lactis subsp. cremoris KW2

61.61

92.55

0.57
  recA Streptococcus mitis NCTC 12261

61.61

92.55

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

61.682

91.977

0.567
  recA Streptococcus pyogenes NZ131

60.615

93.123

0.564
  recA Streptococcus mutans UA159

60.615

93.123

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.258

88.825

0.553

Multiple sequence alignment