Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C_RS11995 Genome accession   NC_004431
Coordinates   2365776..2366252 (+) Length   158 a.a.
NCBI ID   WP_001351157.1    Uniprot ID   -
Organism   Escherichia coli CFT073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2360776..2371252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C_RS11965 (c2522) - 2360931..2361836 (+) 906 WP_000203550.1 diguanylate cyclase regulator RdcB family protein -
  C_RS11970 (c2523) - 2361833..2362903 (+) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  C_RS11975 (c2524) - 2363039..2363716 (+) 678 WP_001362823.1 hypothetical protein -
  C_RS11980 (c2525) - 2363732..2364142 (+) 411 WP_000846704.1 hypothetical protein -
  C_RS11985 (c2526) - 2364363..2365184 (+) 822 WP_001234569.1 DUF932 domain-containing protein -
  C_RS11990 (c2527) - 2365275..2365760 (+) 486 WP_000213703.1 antirestriction protein -
  C_RS11995 (c2529) radC 2365776..2366252 (+) 477 WP_001351157.1 JAB domain-containing protein Machinery gene
  C_RS12000 (c2530) yeeT 2366321..2366542 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  C_RS12005 (c2531) cbeA 2366616..2366984 (+) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  C_RS12010 (c2532) cbtA 2367073..2367447 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  C_RS12015 (c2533) yeeW 2367444..2367638 (+) 195 WP_000988601.1 DUF5983 family protein -
  C_RS29725 - 2367684..2367764 (+) 81 Protein_2309 hypothetical protein -
  C_RS30685 - 2368253..2368435 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  C_RS12030 (c2534) tmaR 2368536..2368865 (-) 330 WP_000450409.1 DUF496 family protein -
  C_RS12035 (c2536) yeeA 2369037..2370095 (-) 1059 WP_001200890.1 FUSC family protein -
  C_RS12040 (c2537) sbmC 2370293..2370766 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17593.25 Da        Isoelectric Point: 6.9180

>NTDB_id=23144 C_RS11995 WP_001351157.1 2365776..2366252(+) (radC) [Escherichia coli CFT073]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKCALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=23144 C_RS11995 WP_001351157.1 2365776..2366252(+) (radC) [Escherichia coli CFT073]
ATGCAACAGATTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTATATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAATGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment