Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   BJE04_RS13180 Genome accession   NC_005139
Coordinates   2823613..2824230 (+) Length   205 a.a.
NCBI ID   WP_011079558.1    Uniprot ID   Q7MHU7
Organism   Vibrio vulnificus YJ016     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2818613..2829230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS13160 (VV2766) - 2818926..2819849 (-) 924 WP_011151121.1 ABC transporter ATP-binding protein -
  BJE04_RS13165 (VV2767) - 2820016..2821686 (-) 1671 WP_013571147.1 SulP family inorganic anion transporter -
  BJE04_RS13170 (VV2768) can 2821928..2822596 (+) 669 WP_013571146.1 carbonate dehydratase -
  BJE04_RS13175 (VV2769) hpt 2822691..2823221 (-) 531 WP_011079559.1 hypoxanthine phosphoribosyltransferase -
  BJE04_RS13180 (VV2770) opaR 2823613..2824230 (+) 618 WP_011079558.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  BJE04_RS13185 (VV2771) lpdA 2824364..2825791 (-) 1428 WP_011079557.1 dihydrolipoyl dehydrogenase -
  BJE04_RS13190 (VV2772) aceF 2826049..2827944 (-) 1896 WP_011151124.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23717.02 Da        Isoelectric Point: 6.1461

>NTDB_id=23139 BJE04_RS13180 WP_011079558.1 2823613..2824230(+) (opaR) [Vibrio vulnificus YJ016]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKENIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPE
DLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDMLCIYKREHE

Nucleotide


Download         Length: 618 bp        

>NTDB_id=23139 BJE04_RS13180 WP_011079558.1 2823613..2824230(+) (opaR) [Vibrio vulnificus YJ016]
ATGGACTCAATCGCAAAGAGACCGCGAACTCGCTTATCTCCGCTAAAACGTAAACAGCAGCTCATGGAAATTGCACTGGA
AGTGTTTGCTCGTCGTGGCATTGGCCGCGGTGGTCACGCAGACATCGCTGAAATTGCGCAAGTTTCTGTGGCGACCGTCT
TCAACTACTTCCCAACTCGCGAAGATCTTGTAGACGAAGTGCTTAACCATGTCGTTCGTCAGTTTTCTAATTTCCTATCT
GACAACATCGATTTGGATCTTCACGCTAAAGAAAACATCGCCAACATCACCAACGCAATGATTGAGCTTGTGGTGCAAGA
CAATCACTGGTTGAAAGTTTGGTTCGAGTGGAGTGCGTCGACGCGTGATGAAGTTTGGCCTCTGTTTGTCACCACCAACC
GAACTAATCAATTGCTGGTACAAAACATGTTCATCAAAGCCATTGAGCGTGGTGAAGTGTGTGACCAACACAACCCAGAA
GATTTGGCGAACTTGTTCCACGGCATTTGTTACTCGCTGTTTGTTCAAGCAAACCGTACCAACAATACCGCAGAGCTCAG
CAAACTGGTCAGCAGCTACTTAGACATGCTATGCATCTATAAACGCGAGCACGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.157

99.512

0.917
  hapR Vibrio cholerae C6706

72.864

97.073

0.707
  hapR Vibrio cholerae strain A1552

72.864

97.073

0.707

Multiple sequence alignment