Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C6H73_RS05715 Genome accession   NZ_CP027219
Coordinates   1052336..1053073 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2015C-3163     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1047336..1058073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H73_RS05680 yfiL 1047494..1047859 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  C6H73_RS05685 aroF 1048069..1049139 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C6H73_RS05690 tyrA 1049150..1050271 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C6H73_RS05695 pheA 1050314..1051474 (-) 1161 WP_000200118.1 bifunctional chorismate mutase/prephenate dehydratase -
  C6H73_RS05700 pheL 1051573..1051620 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C6H73_RS05705 raiA 1051724..1052065 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C6H73_RS05715 comL 1052336..1053073 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C6H73_RS05720 rluD 1053208..1054188 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C6H73_RS05725 yfiH 1054185..1054916 (+) 732 WP_042854265.1 purine nucleoside phosphorylase YfiH -
  C6H73_RS05730 clpC 1055046..1057619 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=231325 C6H73_RS05715 WP_000197686.1 1052336..1053073(-) (comL) [Escherichia coli strain 2015C-3163]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=231325 C6H73_RS05715 WP_000197686.1 1052336..1053073(-) (comL) [Escherichia coli strain 2015C-3163]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376