Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   S101359_RS13035 Genome accession   NZ_CP021500
Coordinates   2643740..2644363 (-) Length   207 a.a.
NCBI ID   WP_088117606.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2638740..2649363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS13010 (S101359_02569) rpsT 2639034..2639300 (+) 267 WP_003325396.1 30S ribosomal protein S20 -
  S101359_RS13015 (S101359_02570) holA 2639315..2640358 (-) 1044 WP_088117604.1 DNA polymerase III subunit delta -
  S101359_RS21255 - 2640398..2640547 (-) 150 WP_010789254.1 hypothetical protein -
  S101359_RS13020 (S101359_02571) - 2640588..2640722 (+) 135 WP_064505211.1 YqzM family protein -
  S101359_RS13025 (S101359_02572) comEC 2640763..2643096 (-) 2334 WP_088117605.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  S101359_RS13030 (S101359_02573) - 2643103..2643672 (-) 570 WP_003325392.1 ComE operon protein 2 -
  S101359_RS13035 (S101359_02574) comEA 2643740..2644363 (-) 624 WP_088117606.1 helix-hairpin-helix domain-containing protein Machinery gene
  S101359_RS13040 (S101359_02575) comER 2644447..2645268 (+) 822 WP_088117607.1 late competence protein ComER -
  S101359_RS13045 (S101359_02576) - 2645338..2646078 (-) 741 WP_003325388.1 class I SAM-dependent methyltransferase -
  S101359_RS13050 (S101359_02577) rsfS 2646075..2646431 (-) 357 WP_003325387.1 ribosome silencing factor -
  S101359_RS13055 (S101359_02578) yqeK 2646448..2647008 (-) 561 WP_088117608.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  S101359_RS13060 (S101359_02579) - 2646998..2647567 (-) 570 WP_003325385.1 nicotinate-nucleotide adenylyltransferase -
  S101359_RS13065 (S101359_02580) yhbY 2647579..2647869 (-) 291 WP_003325384.1 ribosome assembly RNA-binding protein YhbY -
  S101359_RS13070 (S101359_02581) aroE 2647863..2648705 (-) 843 WP_061572764.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21961.81 Da        Isoelectric Point: 4.7220

>NTDB_id=231305 S101359_RS13035 WP_088117606.1 2643740..2644363(-) (comEA) [Bacillus atrophaeus strain SRCM101359]
MNWFYQHKKIILTAGAAVIFIVILLNFPGAKKQEPVQQITASPETAGTRVQQQESKGDADGEKIIIDIKGAVKHPGVYEL
KTGDRVSQAIEKAGGINSEADEKQVNLAELLQDGTVVYIPSEGEESLPSAAATASVQNGAGKEALVNINTASLEELQAIS
GVGPSKAEAIIAYREENGKFQAVEDITNVSGIGEKSFEKIKSAITVK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=231305 S101359_RS13035 WP_088117606.1 2643740..2644363(-) (comEA) [Bacillus atrophaeus strain SRCM101359]
ATGAATTGGTTTTACCAGCACAAAAAAATAATCTTAACGGCAGGTGCTGCTGTCATCTTCATCGTCATCCTGCTTAATTT
TCCCGGCGCAAAGAAGCAGGAGCCTGTTCAGCAAATCACAGCGTCGCCTGAAACGGCGGGCACACGAGTTCAGCAGCAAG
AATCAAAAGGTGATGCTGACGGAGAAAAAATTATCATTGATATTAAAGGCGCTGTCAAACATCCGGGTGTTTACGAATTG
AAAACGGGAGACAGAGTTTCACAGGCTATCGAAAAAGCGGGAGGCATTAATTCGGAGGCTGATGAAAAACAAGTAAATTT
AGCTGAACTCCTGCAGGACGGCACTGTCGTGTACATTCCGAGTGAGGGGGAAGAGTCGTTACCAAGCGCTGCTGCAACTG
CTTCTGTGCAAAACGGAGCAGGAAAAGAGGCTTTGGTTAATATCAATACAGCGTCATTAGAGGAACTGCAGGCTATTTCC
GGGGTCGGTCCGTCAAAAGCAGAAGCTATAATAGCTTATCGTGAAGAAAACGGAAAATTTCAAGCCGTTGAAGACATTAC
AAATGTCTCGGGAATCGGCGAAAAATCATTTGAGAAAATAAAATCAGCCATCACAGTTAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(66-120)

Helix-hairpin-helix motif (HHH_3)

(143-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

65.7

100

0.657

Multiple sequence alignment