Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   S101359_RS13025 Genome accession   NZ_CP021500
Coordinates   2640763..2643096 (-) Length   777 a.a.
NCBI ID   WP_088117605.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2635763..2648096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS12995 (S101359_02566) - 2636094..2636432 (-) 339 WP_004429433.1 YqxA family protein -
  S101359_RS13000 (S101359_02567) spoIIP 2636451..2637659 (-) 1209 WP_088117603.1 stage II sporulation protein P -
  S101359_RS13005 (S101359_02568) gpr 2637726..2638829 (-) 1104 WP_003325397.1 GPR endopeptidase -
  S101359_RS13010 (S101359_02569) rpsT 2639034..2639300 (+) 267 WP_003325396.1 30S ribosomal protein S20 -
  S101359_RS13015 (S101359_02570) holA 2639315..2640358 (-) 1044 WP_088117604.1 DNA polymerase III subunit delta -
  S101359_RS21255 - 2640398..2640547 (-) 150 WP_010789254.1 hypothetical protein -
  S101359_RS13020 (S101359_02571) - 2640588..2640722 (+) 135 WP_064505211.1 YqzM family protein -
  S101359_RS13025 (S101359_02572) comEC 2640763..2643096 (-) 2334 WP_088117605.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  S101359_RS13030 (S101359_02573) - 2643103..2643672 (-) 570 WP_003325392.1 ComE operon protein 2 -
  S101359_RS13035 (S101359_02574) comEA 2643740..2644363 (-) 624 WP_088117606.1 helix-hairpin-helix domain-containing protein Machinery gene
  S101359_RS13040 (S101359_02575) comER 2644447..2645268 (+) 822 WP_088117607.1 late competence protein ComER -
  S101359_RS13045 (S101359_02576) - 2645338..2646078 (-) 741 WP_003325388.1 class I SAM-dependent methyltransferase -
  S101359_RS13050 (S101359_02577) rsfS 2646075..2646431 (-) 357 WP_003325387.1 ribosome silencing factor -
  S101359_RS13055 (S101359_02578) yqeK 2646448..2647008 (-) 561 WP_088117608.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  S101359_RS13060 (S101359_02579) - 2646998..2647567 (-) 570 WP_003325385.1 nicotinate-nucleotide adenylyltransferase -
  S101359_RS13065 (S101359_02580) yhbY 2647579..2647869 (-) 291 WP_003325384.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 86958.74 Da        Isoelectric Point: 8.5571

>NTDB_id=231303 S101359_RS13025 WP_088117605.1 2640763..2643096(-) (comEC) [Bacillus atrophaeus strain SRCM101359]
MKNTRLLLPLAAASATAGIAAASFFSALLIFVLSLFFVYIKTKQLSLVFVSLSAFTIYFFLTSVIDSHNVSSYDFGTYKL
RAVIQEIPKIDGDRMSMVVRTPDGEKWAASYKMESLAEKEKLSQIEPGTACTFTGSLEKPKNATVPGTFDYKQYLYSQHI
HWNYSITAIQNCSTADGIQYRLLSVRKSLISFVNDHVPESSAGIVQALILGDRFYLMDDVLEAYQKLGVVHLLAISGLHV
GIVTAGIFYVLIRIGITREKAAILLLLFLPVYTILTGAAPSVMRAALMSGLYFIGSLWGKRMNPSIVICLSYLILLLFNP
YHLFQIGFQLSFAVSFSLILSSSIFKKLQSGGLVQLAMVSLIAQLGSLPILIYYFQQFSLISIPMNIIMVPFYTMFVMPF
SMIGFLLLSLSEPVGEYLFYWFDYIIRWSDKLIKYAADIEQFTVIAARPNALVLFGLIGSIVVLLTAMEKSALYQRLLSV
LLFIATLFLVVIFPRLDPEGEVDMLDIGQGDSMFISAPYQRGHVMIDTGGILSYLTEPWREKWHPFSLSEKVLIPFLTAK
GIKQLDALILTHADQDHIGEAKVLIKRHKVKQLIVPKGFVSEPNDEKVLRTAQQEGICITEVKRGDTFQIKDLQFRVLSP
ETPDPNSKNNSSLVLWMKTGHLSWVLTGDLEKEGEQEIMKAFPDLKADILKAGHHGSKGSTGEEFVRQLKPKAAIISAGE
NNRYHHPHQEVLDILKAHSVRIFRTDQSGTIQYRFKSGFGTFSVYPPYDTTGMTETN

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=231303 S101359_RS13025 WP_088117605.1 2640763..2643096(-) (comEC) [Bacillus atrophaeus strain SRCM101359]
ATGAAGAACACACGCCTTCTTTTGCCTCTGGCGGCAGCATCAGCAACGGCTGGCATAGCTGCTGCCTCCTTTTTCTCCGC
ACTTCTCATATTCGTTTTATCACTCTTCTTTGTTTATATCAAAACAAAACAGCTCTCACTCGTTTTTGTTAGTTTATCGG
CTTTTACGATCTATTTTTTCTTAACCTCTGTTATCGATTCTCATAATGTATCGTCCTATGACTTCGGCACCTATAAGCTT
CGGGCGGTGATTCAGGAAATTCCAAAGATTGACGGAGACCGTATGTCCATGGTAGTTCGAACGCCGGATGGGGAAAAGTG
GGCTGCATCATATAAAATGGAGTCGCTTGCTGAAAAGGAAAAACTTTCACAGATAGAGCCAGGGACGGCTTGTACGTTTA
CCGGTTCTTTAGAAAAGCCGAAAAACGCAACGGTTCCCGGCACTTTCGATTATAAACAGTATCTGTACAGCCAGCATATT
CACTGGAATTACTCGATAACAGCAATCCAAAATTGCAGCACGGCAGATGGAATACAGTATAGGCTTTTAAGCGTGAGAAA
GTCTCTTATTTCATTTGTGAATGACCATGTTCCGGAATCCTCAGCAGGCATCGTGCAGGCGCTCATCCTGGGTGACAGAT
TTTATCTTATGGACGATGTGCTGGAAGCGTATCAAAAGCTCGGAGTTGTCCATCTGCTTGCGATTTCAGGGCTTCATGTA
GGTATTGTGACAGCTGGTATATTCTATGTGCTCATTCGAATTGGGATAACGAGAGAGAAGGCTGCCATTCTGCTGCTGTT
GTTTTTGCCTGTTTATACGATTTTAACCGGAGCGGCTCCGTCTGTGATGCGCGCAGCTCTTATGTCAGGGCTTTATTTTA
TCGGCAGTTTGTGGGGGAAGCGTATGAACCCTTCAATAGTGATCTGTCTTTCTTATTTAATTCTCCTTCTGTTTAATCCG
TATCATCTTTTTCAAATAGGGTTTCAGCTCTCTTTTGCTGTAAGTTTCTCTTTAATACTTTCTTCCTCTATTTTTAAAAA
ACTTCAAAGCGGGGGACTCGTGCAGCTCGCCATGGTGTCACTCATCGCTCAGCTTGGATCGCTTCCCATCCTTATCTATT
ATTTTCAGCAGTTTTCTCTTATCAGTATACCGATGAATATCATTATGGTGCCTTTTTATACGATGTTTGTCATGCCGTTT
TCTATGATAGGTTTTCTTTTGTTAAGTTTGTCTGAGCCGGTCGGTGAGTACCTGTTTTATTGGTTTGATTACATCATACG
CTGGAGTGACAAGCTGATAAAGTATGCTGCAGATATTGAACAATTTACAGTGATTGCAGCTCGTCCAAATGCGCTTGTCT
TGTTTGGGCTGATTGGATCTATCGTTGTTTTGCTGACAGCCATGGAGAAATCCGCCCTTTACCAAAGACTTCTGTCTGTG
CTGCTCTTTATCGCAACGCTTTTTCTGGTGGTTATTTTTCCTCGCCTGGACCCCGAGGGAGAAGTGGATATGCTTGATAT
CGGTCAGGGAGACAGCATGTTTATCAGCGCTCCGTATCAGCGCGGCCATGTGATGATAGACACTGGAGGAATCCTTTCAT
ACTTAACAGAGCCATGGAGGGAAAAATGGCATCCTTTTTCGCTTAGCGAAAAGGTGCTCATTCCTTTCTTAACAGCAAAA
GGCATTAAACAGCTTGATGCCTTAATTTTGACTCATGCGGACCAAGACCATATAGGGGAAGCAAAGGTTCTGATCAAGCG
GCATAAAGTCAAACAGCTCATTGTGCCGAAAGGATTTGTTTCTGAACCGAATGATGAAAAAGTGCTGCGGACCGCACAGC
AGGAGGGAATTTGCATTACAGAGGTTAAACGAGGCGACACCTTTCAGATAAAGGATTTACAGTTTCGCGTACTGTCGCCT
GAGACTCCCGACCCGAACAGCAAAAATAACTCTTCTCTCGTGCTATGGATGAAAACAGGTCATCTCAGCTGGGTGCTGAC
AGGCGATCTCGAAAAGGAAGGGGAACAGGAGATCATGAAAGCTTTTCCGGATCTAAAAGCGGATATTTTAAAGGCGGGGC
ATCATGGCAGTAAAGGATCTACCGGAGAAGAGTTTGTCCGCCAGCTGAAGCCAAAAGCGGCAATTATTTCTGCCGGTGAG
AATAATCGGTATCACCATCCCCATCAGGAAGTCCTTGATATATTAAAAGCTCATTCTGTCCGCATTTTCCGCACTGATCA
AAGCGGGACGATCCAATACAGATTTAAAAGCGGGTTTGGAACCTTTTCTGTCTATCCTCCATATGATACAACAGGTATGA
CGGAGACGAATTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(25-169)

Competence protein (Competence)

(208-467)

Metallo-beta-lactamase superfamily (Lactamase_B)

(508-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

66.152

100

0.662

Multiple sequence alignment