Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | S101359_RS12590 | Genome accession | NZ_CP021500 |
| Coordinates | 2561559..2562596 (-) | Length | 345 a.a. |
| NCBI ID | WP_088117572.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain SRCM101359 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2556559..2567596
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S101359_RS12540 (S101359_02475) | - | 2556716..2557498 (-) | 783 | WP_063638541.1 | TasA family protein | - |
| S101359_RS12545 (S101359_02476) | - | 2557562..2558134 (-) | 573 | WP_010789195.1 | signal peptidase I | - |
| S101359_RS12550 (S101359_02477) | tapA | 2558118..2558819 (-) | 702 | WP_088117567.1 | amyloid fiber anchoring/assembly protein TapA | - |
| S101359_RS12555 (S101359_02478) | - | 2559081..2559404 (+) | 324 | WP_088117568.1 | DUF3889 domain-containing protein | - |
| S101359_RS12560 (S101359_02479) | - | 2559451..2559630 (-) | 180 | WP_003325435.1 | YqzE family protein | - |
| S101359_RS12565 (S101359_02480) | comGG | 2559700..2560074 (-) | 375 | WP_088117569.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| S101359_RS12570 (S101359_02481) | comGF | 2560075..2560581 (-) | 507 | WP_274379311.1 | competence type IV pilus minor pilin ComGF | - |
| S101359_RS12575 (S101359_02482) | comGE | 2560484..2560831 (-) | 348 | WP_088117570.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| S101359_RS12580 (S101359_02483) | comGD | 2560815..2561180 (-) | 366 | WP_258235513.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| S101359_RS12585 (S101359_02484) | comGC | 2561245..2561553 (-) | 309 | WP_087941811.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| S101359_RS12590 (S101359_02485) | comGB | 2561559..2562596 (-) | 1038 | WP_088117572.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| S101359_RS12595 (S101359_02486) | comGA | 2562583..2563653 (-) | 1071 | WP_088117573.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| S101359_RS12605 (S101359_02488) | - | 2564033..2564986 (-) | 954 | WP_088117575.1 | magnesium transporter CorA family protein | - |
| S101359_RS12610 (S101359_02489) | - | 2565098..2566456 (+) | 1359 | WP_088117576.1 | hemolysin family protein | - |
| S101359_RS12615 (S101359_02490) | - | 2566523..2567374 (-) | 852 | WP_088117577.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 40112.30 Da Isoelectric Point: 9.6748
>NTDB_id=231300 S101359_RS12590 WP_088117572.1 2561559..2562596(-) (comGB) [Bacillus atrophaeus strain SRCM101359]
MKRIKKSWPINDQANLLNRLGDMTENGYNLLDGLRLMELQMNKRQRTEMSAAVNRLREGEPFYQVLQALAFHKEAVSICY
LAEMHGELSVAMRQSGGLLERKLTQANQLKKVIRYPIFLIFTVFVMFYILQAVIIPQFSGVYQSMNMETSRTTAVIFAFF
QHVHYAVIGFVLLALGAALYYWFGFKKKSPADKMLFFVRIPILGRLVILFNSYFFSLQLSSLLKSGLSIYDSLKAFKEQS
FLPFYRQEAEQIINQLRAGESIDRALYKHPCYENDFCEVVLHGQLSGQLHRELFTYSQFLMERLERKVEKWTGILQPVIY
GIVAGMILIVYLSMLLPMYQMMNQL
MKRIKKSWPINDQANLLNRLGDMTENGYNLLDGLRLMELQMNKRQRTEMSAAVNRLREGEPFYQVLQALAFHKEAVSICY
LAEMHGELSVAMRQSGGLLERKLTQANQLKKVIRYPIFLIFTVFVMFYILQAVIIPQFSGVYQSMNMETSRTTAVIFAFF
QHVHYAVIGFVLLALGAALYYWFGFKKKSPADKMLFFVRIPILGRLVILFNSYFFSLQLSSLLKSGLSIYDSLKAFKEQS
FLPFYRQEAEQIINQLRAGESIDRALYKHPCYENDFCEVVLHGQLSGQLHRELFTYSQFLMERLERKVEKWTGILQPVIY
GIVAGMILIVYLSMLLPMYQMMNQL
Nucleotide
Download Length: 1038 bp
>NTDB_id=231300 S101359_RS12590 WP_088117572.1 2561559..2562596(-) (comGB) [Bacillus atrophaeus strain SRCM101359]
ATGAAGAGGATTAAAAAAAGCTGGCCGATAAACGATCAAGCTAATTTGCTAAACAGACTCGGTGACATGACAGAAAACGG
ATACAATCTTCTGGATGGATTGCGGTTAATGGAACTGCAAATGAATAAGCGTCAGCGTACGGAAATGTCTGCTGCTGTAA
ATCGTTTACGAGAGGGGGAACCATTCTATCAGGTTTTGCAGGCTTTGGCTTTCCACAAGGAAGCCGTCAGCATTTGTTAT
TTAGCAGAAATGCATGGAGAATTGTCCGTTGCTATGAGGCAAAGCGGTGGGCTGTTGGAAAGGAAATTAACACAGGCCAA
TCAGCTGAAAAAAGTCATCCGTTATCCGATTTTCCTGATCTTCACTGTCTTTGTGATGTTTTATATCCTGCAAGCTGTCA
TCATCCCGCAATTTTCAGGAGTTTATCAGTCCATGAATATGGAAACCTCACGCACAACCGCTGTTATATTCGCTTTTTTT
CAGCACGTTCATTATGCAGTGATTGGTTTTGTCTTGCTTGCTCTCGGAGCGGCGCTCTATTACTGGTTTGGATTTAAGAA
GAAGTCCCCGGCAGACAAAATGCTCTTTTTTGTACGGATACCCATACTCGGAAGACTTGTCATTTTATTTAACAGCTACT
TTTTTTCTTTGCAGCTCAGCAGCCTATTAAAGTCTGGACTGTCTATTTACGACAGCCTTAAGGCCTTTAAAGAGCAATCG
TTCCTCCCTTTTTACCGTCAGGAGGCAGAACAAATCATTAACCAATTAAGGGCTGGAGAGTCCATAGATAGAGCTCTGTA
TAAACACCCATGCTATGAAAATGACTTTTGTGAAGTGGTGTTGCACGGCCAATTAAGCGGGCAGCTGCATCGTGAACTAT
TCACCTACAGCCAGTTTTTAATGGAGCGGCTGGAGCGAAAGGTTGAAAAATGGACGGGAATCCTTCAGCCCGTCATCTAC
GGTATTGTTGCCGGGATGATTTTAATTGTGTATTTGTCGATGCTTTTGCCTATGTATCAGATGATGAATCAATTGTAG
ATGAAGAGGATTAAAAAAAGCTGGCCGATAAACGATCAAGCTAATTTGCTAAACAGACTCGGTGACATGACAGAAAACGG
ATACAATCTTCTGGATGGATTGCGGTTAATGGAACTGCAAATGAATAAGCGTCAGCGTACGGAAATGTCTGCTGCTGTAA
ATCGTTTACGAGAGGGGGAACCATTCTATCAGGTTTTGCAGGCTTTGGCTTTCCACAAGGAAGCCGTCAGCATTTGTTAT
TTAGCAGAAATGCATGGAGAATTGTCCGTTGCTATGAGGCAAAGCGGTGGGCTGTTGGAAAGGAAATTAACACAGGCCAA
TCAGCTGAAAAAAGTCATCCGTTATCCGATTTTCCTGATCTTCACTGTCTTTGTGATGTTTTATATCCTGCAAGCTGTCA
TCATCCCGCAATTTTCAGGAGTTTATCAGTCCATGAATATGGAAACCTCACGCACAACCGCTGTTATATTCGCTTTTTTT
CAGCACGTTCATTATGCAGTGATTGGTTTTGTCTTGCTTGCTCTCGGAGCGGCGCTCTATTACTGGTTTGGATTTAAGAA
GAAGTCCCCGGCAGACAAAATGCTCTTTTTTGTACGGATACCCATACTCGGAAGACTTGTCATTTTATTTAACAGCTACT
TTTTTTCTTTGCAGCTCAGCAGCCTATTAAAGTCTGGACTGTCTATTTACGACAGCCTTAAGGCCTTTAAAGAGCAATCG
TTCCTCCCTTTTTACCGTCAGGAGGCAGAACAAATCATTAACCAATTAAGGGCTGGAGAGTCCATAGATAGAGCTCTGTA
TAAACACCCATGCTATGAAAATGACTTTTGTGAAGTGGTGTTGCACGGCCAATTAAGCGGGCAGCTGCATCGTGAACTAT
TCACCTACAGCCAGTTTTTAATGGAGCGGCTGGAGCGAAAGGTTGAAAAATGGACGGGAATCCTTCAGCCCGTCATCTAC
GGTATTGTTGCCGGGATGATTTTAATTGTGTATTTGTCGATGCTTTTGCCTATGTATCAGATGATGAATCAATTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
69.35 |
93.623 |
0.649 |