Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   S101359_RS12350 Genome accession   NZ_CP021500
Coordinates   2523952..2525682 (-) Length   576 a.a.
NCBI ID   WP_088117554.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2518952..2530682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS12330 (S101359_02433) - 2519088..2520206 (+) 1119 WP_088117553.1 NADH-dependent flavin oxidoreductase -
  S101359_RS12335 (S101359_02434) - 2520371..2521228 (+) 858 WP_003325485.1 manganese catalase family protein -
  S101359_RS12340 (S101359_02435) spo0A 2521396..2522193 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  S101359_RS12345 (S101359_02436) spoIVB 2522476..2523756 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  S101359_RS12350 (S101359_02437) recN 2523952..2525682 (-) 1731 WP_088117554.1 DNA repair protein RecN Machinery gene
  S101359_RS12355 (S101359_02438) argR 2525717..2526166 (-) 450 WP_003325480.1 arginine repressor ArgR -
  S101359_RS12360 (S101359_02439) - 2526265..2527110 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -
  S101359_RS12365 (S101359_02440) dxs 2527107..2529008 (-) 1902 WP_088117555.1 1-deoxy-D-xylulose-5-phosphate synthase -
  S101359_RS21345 - 2529015..2529191 (-) 177 WP_157763246.1 hypothetical protein -
  S101359_RS12370 (S101359_02441) - 2529215..2530105 (-) 891 WP_010789177.1 polyprenyl synthetase family protein -
  S101359_RS12375 (S101359_02442) - 2530095..2530349 (-) 255 WP_003325476.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64445.18 Da        Isoelectric Point: 4.7139

>NTDB_id=231293 S101359_RS12350 WP_088117554.1 2523952..2525682(-) (recN) [Bacillus atrophaeus strain SRCM101359]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFEVC
HEQGIDVSDDMIVLRRDINSSGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLQLLDKFAGEEADSALH
AYREGYQRYMKVLKKLRQLSESEQEMAHRLDLIQFQLDEIESAGLELNEDDILQEERLQISNFEKIYEALQNAYNALRNE
QGGLDWVGMASSQLDDISDINEPLQKLSESVSNSYYLLEDSTFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIQNRDSHLQTLKQELDSVGKDVAVEAANVSKIRKAWAKKLAVQIQQELKSLYMEKSTFDTEFLI
RTASRNEEAPIVNGQPVQLTDQGIDIVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLLIAKESKDGRTTTHVTPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQANQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=231293 S101359_RS12350 WP_088117554.1 2523952..2525682(-) (recN) [Bacillus atrophaeus strain SRCM101359]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAAGAATTGACGGTTTCTTTTGAACGGGGGCTGACTGTATT
AACGGGAGAAACCGGTGCCGGTAAATCCATTATTATTGATGCCATTTCTCTTCTTGTCGGAGGCCGTGGATCGTCTGAAT
TTGTCAGGTACGGCGAAACGAAAGCTGAACTTGAAGGGCTGTTTCTTTTAGAAAGCGGACATCCTGTTTTTGAGGTGTGC
CATGAACAGGGGATTGATGTATCAGATGATATGATTGTGTTGAGGCGTGATATAAATTCCAGCGGAAAAAGCGTGTGCCG
CGTCAATGGTAAGCTTGTTACAATTGCAGCGCTAAGGGAAATCGGCAGGCTCTTATTAGATATCCACGGGCAGCACGATA
ATCAGCTGCTGATGGAAGACGATAAGCATCTTCAGTTGTTGGACAAGTTTGCCGGAGAAGAAGCTGACAGCGCGCTCCAT
GCTTATCGGGAAGGTTATCAGCGTTACATGAAGGTACTGAAAAAACTTAGGCAGCTGTCTGAAAGCGAGCAGGAAATGGC
CCACCGGCTGGATTTGATTCAATTCCAGCTGGATGAAATTGAATCAGCGGGTCTGGAACTGAATGAAGACGATATTCTGC
AAGAGGAACGCCTGCAAATTTCAAACTTCGAAAAGATTTATGAGGCGCTGCAAAATGCTTATAACGCGCTTCGAAATGAG
CAGGGCGGATTGGACTGGGTCGGCATGGCGTCAAGCCAGCTTGACGATATATCCGACATCAATGAACCGCTGCAAAAACT
TTCTGAAAGTGTCTCTAACTCCTATTATCTGCTTGAAGATTCTACATTTCAAATGAGAAACATGCTGGATGAGCTTGAGT
ACGATCCGGAGCGTTTGAATTTTATTGAAACCCGCTTAAATGAGATCAAGCAGCTGAAACGTAAATACGGCGCTACTGTA
GAAGACATTTTGGAATACGCTTCAAAAATTGAAGAAGAGATTGACCAAATCCAAAACAGAGACAGCCACCTTCAAACGCT
TAAGCAGGAGCTGGATTCTGTCGGTAAAGATGTGGCGGTAGAAGCGGCAAACGTCTCAAAAATCAGAAAAGCGTGGGCGA
AAAAGCTGGCTGTTCAAATTCAGCAGGAGCTGAAAAGCCTTTATATGGAGAAGTCAACATTTGATACAGAATTTCTTATC
AGGACGGCATCGCGCAATGAAGAAGCTCCGATTGTAAACGGACAGCCGGTCCAACTGACTGATCAAGGAATAGATATAGT
GAAGTTTCTGATCTCGACCAATACGGGCGAACCGCTAAAACCGCTTTCTAAAGTAGCATCTGGCGGAGAGTTGTCGAGGG
TGATGCTTGCGTTGAAAAGCATCTTTTCCTCACAGCAGGATGTAACGTCAATCATCTTTGACGAAGTCGATACAGGAGTC
AGCGGAAGAGTCGCTCAGGCGATCGCCGAAAAGATTCATAAGGTGTCAATGGGATCACAAGTGCTTTGCATCACCCATCT
GCCTCAGGTCGCCGCTATGGCGGATACCCATCTTTTAATTGCCAAAGAATCAAAAGACGGAAGAACAACAACTCATGTCA
CTCCGCTGTCAAAGCAGGAAAAGGTGGCGGAAATCGGCCGGATGATTGCCGGAGTCGAAGTGACCGATCTGACCAAACGG
CATGCGAAGGAACTTTTAAAACAAGCCAATCAGGTGAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

90.278

100

0.903

Multiple sequence alignment