Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   S101359_RS12340 Genome accession   NZ_CP021500
Coordinates   2521396..2522193 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2516396..2527193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS12315 (S101359_02430) - 2516829..2517572 (-) 744 WP_003325489.1 glycerophosphodiester phosphodiesterase -
  S101359_RS12320 (S101359_02431) - 2517684..2518307 (-) 624 WP_010789171.1 N-acetylmuramoyl-L-alanine amidase -
  S101359_RS12325 (S101359_02432) - 2518330..2518632 (-) 303 WP_003325487.1 hypothetical protein -
  S101359_RS12330 (S101359_02433) - 2519088..2520206 (+) 1119 WP_088117553.1 NADH-dependent flavin oxidoreductase -
  S101359_RS12335 (S101359_02434) - 2520371..2521228 (+) 858 WP_003325485.1 manganese catalase family protein -
  S101359_RS12340 (S101359_02435) spo0A 2521396..2522193 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  S101359_RS12345 (S101359_02436) spoIVB 2522476..2523756 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  S101359_RS12350 (S101359_02437) recN 2523952..2525682 (-) 1731 WP_088117554.1 DNA repair protein RecN Machinery gene
  S101359_RS12355 (S101359_02438) argR 2525717..2526166 (-) 450 WP_003325480.1 arginine repressor ArgR -
  S101359_RS12360 (S101359_02439) - 2526265..2527110 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=231292 S101359_RS12340 WP_010789174.1 2521396..2522193(-) (spo0A) [Bacillus atrophaeus strain SRCM101359]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=231292 S101359_RS12340 WP_010789174.1 2521396..2522193(-) (spo0A) [Bacillus atrophaeus strain SRCM101359]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTCGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCGTGGCTTATAATGGCCAGGAATGCCTGTCTTTATTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGGGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGGCATATCCGCCAAGTCAGCGGAAATTCAAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATTAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGCATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCACATATCAAAGGGTATCTCTACCTGCGCGAAGCCATCTCAATGGTCTACAACGATATCGAATT
GCTCGGCAGCATCACGAAAGTACTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCATTGTTTGGGTACACAGTGAGCATG
ACGAAGGCAAAACCTACAAACTCAGAATTCATTGCGATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974

Multiple sequence alignment