Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   S101359_RS01940 Genome accession   NZ_CP021500
Coordinates   375389..375826 (-) Length   145 a.a.
NCBI ID   WP_088116478.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 370389..380826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS01905 (S101359_00375) - 370480..371616 (+) 1137 WP_088116473.1 zinc-dependent alcohol dehydrogenase -
  S101359_RS01910 (S101359_00376) - 371629..372084 (+) 456 WP_088116474.1 RDD family protein -
  S101359_RS01915 (S101359_00377) - 372169..372498 (+) 330 WP_088116475.1 YckD family protein -
  S101359_RS01925 (S101359_00378) - 372701..373429 (+) 729 WP_088116476.1 AAA family ATPase -
  S101359_RS01930 (S101359_00379) - 373499..374935 (+) 1437 WP_088116477.1 family 1 glycosylhydrolase -
  S101359_RS01935 (S101359_00380) nin/comJ 374972..375370 (-) 399 WP_010787604.1 competence protein ComJ Regulator
  S101359_RS01940 (S101359_00381) nucA/comI 375389..375826 (-) 438 WP_088116478.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  S101359_RS01945 (S101359_00382) - 376048..377751 (-) 1704 WP_208618322.1 methyl-accepting chemotaxis protein -
  S101359_RS01950 (S101359_00383) hxlB 377880..378437 (-) 558 WP_010787607.1 6-phospho-3-hexuloisomerase -
  S101359_RS01955 (S101359_00384) hxlA 378444..379076 (-) 633 WP_088116480.1 3-hexulose-6-phosphate synthase -
  S101359_RS01960 (S101359_00385) - 379294..379659 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16005.77 Da        Isoelectric Point: 4.1626

>NTDB_id=231261 S101359_RS01940 WP_088116478.1 375389..375826(-) (nucA/comI) [Bacillus atrophaeus strain SRCM101359]
MDLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEERR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=231261 S101359_RS01940 WP_088116478.1 375389..375826(-) (nucA/comI) [Bacillus atrophaeus strain SRCM101359]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGAACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCCGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

82.639

99.31

0.821

Multiple sequence alignment